PlotDimension: PlotDimension
In carter-allen/IRISFGM: Comprehensive Analysis of Gene Interactivity Networks Based on Single-Cell RNA-Seq
Description
Usage
Arguments
Value
Examples
Description
Generate Umap and it requires user to input cell label index on console window.
Usage
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PlotDimension(object, ...)
.plotDimension(object, reduction = "umap", pt_size = 1)
## S4 method for signature 'IRISFGM'
PlotDimension(object, reduction = "umap", pt_size = 1)
Arguments
object
Input IRIS-FGM Object
...
other arguments passed to methods
reduction
Choose one of approaches for dimension reduction, including 'pca', 'tsne', 'umap'.
pt_size
Point size, default is 0.
Value
generate plot on umap space.
Examples
1
## Not run: PlotDimension(object)
carter-allen/IRISFGM documentation built on Dec. 31, 2020, 9:54 p.m.
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Description Usage Arguments Value Examples
Description
Generate Umap and it requires user to input cell label index on console window.
Usage
1 2 3 4 5 6 | PlotDimension(object, ...)
.plotDimension(object, reduction = "umap", pt_size = 1)
## S4 method for signature 'IRISFGM'
PlotDimension(object, reduction = "umap", pt_size = 1)
|
Arguments
object |
Input IRIS-FGM Object |
... |
other arguments passed to methods |
reduction |
Choose one of approaches for dimension reduction, including 'pca', 'tsne', 'umap'. |
pt_size |
Point size, default is 0. |
Value
generate plot on umap space.
Examples
1 | ## Not run: PlotDimension(object)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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