DotPlotPathway: DotPlotPathway

In carter-allen/IRISFGM: Comprehensive Analysis of Gene Interactivity Networks Based on Single-Cell RNA-Seq

Description

Plot dotplot for enrichment pathway

Usage

DotPlotPathway(object, ...)

.dotPlotPathway(
  object = NULL,
  genes.source = c("CTS", "MC", "Bicluster"),
  showCategory = 20
)

## S4 method for signature 'IRISFGM'
DotPlotPathway(
  object = NULL,
  genes.source = c("CTS", "MC", "Bicluster"),
  showCategory = 20
)

Arguments

object	Input IRIS-FGM object
...	other arguments passed to methods
genes.source	Decide the plot source either "CTS", "MC" or "Bicluster." "CTS" means DEGs from DEsingle label, "MC" means DEGs from MC label, and "Bicluster" means using gene module from the selected bicluster.
showCategory	Show this number of pathway results.

Value

This function will generate dot plot for pathway enrichment results.

Examples

## Not run: 
DotPlotPathway(object,genes.source = "module" )

## End(Not run)

carter-allen/IRISFGM documentation built on Dec. 31, 2020, 9:54 p.m.