ProcessData: ProcessData

In carter-allen/IRISFGM: Comprehensive Analysis of Gene Interactivity Networks Based on Single-Cell RNA-Seq

Description

Process data via normalization and imputation.

Usage

ProcessData(object, ...)

.processData(
  object = NULL,
  normalization = "cpm",
  library.size = 1e+05,
  IsImputation = FALSE,
  seed = 123
)

## S4 method for signature 'IRISFGM'
ProcessData(
  object = NULL,
  normalization = "cpm",
  library.size = 1e+05,
  IsImputation = FALSE,
  seed = 123
)

Arguments

object	Input IRISFGM object
...	other arguments passed to methods
normalization	two options: (1)library size noralization by using library size factor: 1e6, equal to CPM (count-per-million-reads), or (2) using 'scran' normalization method.
library.size	Sets the scale factor for cpm normalization
IsImputation	imputation method is provided by DrImpute. Default is FALSE.
seed	set seed for reproducibility.

carter-allen/IRISFGM documentation built on Dec. 31, 2020, 9:54 p.m.