Man pages for carter-allen/IRISFGM
Comprehensive Analysis of Gene Interactivity Networks Based on Single-Cell RNA-Seq

AddMetaAddMeta
BIC_LTMGBIC_LTMG BIC_LTMG
BIC_ZIMGBIC_ZIMG fits different model BIC_ZIMG fits different model
CalBinaryMultiSignalCalBinaryMultiSignal
CalBinarySingleSignalCalBinarySingleSignal
CLUSTERINGPackaging clustering method This function is used for...
CreateIRISFGMObjectCreateIRISFGMObject
DimReduce-classCreate DimReduce object
dot-generateNetObjectGenerateNetObject Generate Net Object for the network use.
dot-getBlockgetblock function
dot-IDConvertconvert ID convert ID
DotPlotPathwayDotPlotPathway
dot-runBiclusterBaseOnDiscretizationRun Discretization Generate temporal discretized file
dot-runBiclusterBaseOnLTMGRunBicusterBaseOnLTMG
dot-RunGORunGO RunGO
dot-RunKEGGRunKEGG RunKEGG
dot-separateBicseparateBic separate biclusters
FindClassBasedOnMCFindClassBasedOnMC
FindGlobalMarkersFindGlobalMarkers
FindMarkerFindMarker
Fit_LTMGFit_LTMG Fit_LTMG
GetBinaryMultiSignalGetBinaryMultiSignal
GetBinarySingleSignalGetBinarySingleSignal
GetLTMGmatrixGetLTMGmatrix
Global_ZcutGlobal_Zcut create Zcut Global_Zcut create Zcut
GRAPHgenerate graph
InverseMillsRatioTitle Title
IRISFGM-classIRISFGM
KS_LTMGKS_LTMG KS_LTMG
KS_ZIMGKS_ZIMG KS_ZIMG
LogSeparateKRpkmNewTitle Title
LogSeparateKRpkmNewLRLogSeparateKRpkmNewLR
LTMGLTMG LTMG
MCLMCL clustering MCL clustering
MIN_returnMIN_return MIN_return
MINUSMINUS MINUS
Pi_Zj_Zcut_newTitle Title
PlotDimensionPlotDimension
PlotHeatmapPlotHeatmap
PlotMarkerHeatmapPlotMarkerHeatmap will visualize global marker This function...
PlotMetaPlotMeta
PlotModuleNetworkPlotModuleNetwork
PlotNetworkPlotNetwork
ProcessDataProcessData
Pure_CDFPure_CDF Pure_CDF
qubicqubic
ReadFrom10X_folderReadFrom10X_folder
ReadFrom10X_h5ReadFrom10X_h5
RunBiclusterRunBicluster
RunClassificationRunClassification
RunDimensionReductionRunDimensionReduction
RunDiscretizationRunDiscretization
RunLTMGRunLTMG
RunPathwayRunPathway
SCspectral Clustering method spectral Clustering method
SeparateKRpkmNewTitle Title
SeparateKRpkmNew2Title Title
SeparateKRpkmNewLRSeparateKRpkmNewLRPlus Calcuate the LTMG_2LR for some genes...
SeparateKRpkmNewLRPlusSeparateKRpkmNewLRPlus Calcuate the LTMG_2LR for some genes...
SeparateKRpkmNewpTitle Title
State_returnState_return State_return
SubsetDataSubsetData
carter-allen/IRISFGM documentation built on Dec. 31, 2020, 9:54 p.m.