dot-runBiclusterBaseOnLTMG: RunBicusterBaseOnLTMG

In carter-allen/IRISFGM: Comprehensive Analysis of Gene Interactivity Networks Based on Single-Cell RNA-Seq

Description

Run bicluster based on LTMG

Usage

.runBiclusterBaseOnLTMG(
  object = NULL,
  OpenDual = FALSE,
  Extension = 1,
  NumBlockOutput = 100,
  BlockOverlap = 0.9,
  BlockCellMin = 15
)

Arguments

object	input IRISFMG object
OpenDual	the flag using the lower bound of condition number. Default: 5 percent of the gene number in current bicluster.
Extension	consistency level of the block (0.5-1.0], the minimum ratio between the number of identical valid symbols in a column and the total number of rows in the output. Default: 1.0.
NumBlockOutput	number of blocks to report. Default: 100.
BlockOverlap	filtering overlapping blocks. Default: 0.7.
BlockCellMin	minimum column width of the block. Default: 15 columns.

carter-allen/IRISFGM documentation built on Dec. 31, 2020, 9:54 p.m.