Files in cboettig/nonparametric-bayes

Nonparametric Bayes inference for ecological models

.Rbuildignore

.drone.yml

.gitignore

.travis.yml

.zenodo.json

DESCRIPTION

LICENSE

NAMESPACE

R/gp-replicate-fns.R R/gp_fit.R R/gp_mcmc.R R/gp_plot.R R/gp_trasition_matrix.R R/zzz.R README.md

inst/examples/.gitignore

inst/examples/BUGS/allen.Rmd

inst/examples/BUGS/allen.bugs

inst/examples/BUGS/allen.md inst/examples/BUGS/bayesian-ricker.Rmd inst/examples/BUGS/custom-plots.Rmd inst/examples/BUGS/external-chunks.R inst/examples/BUGS/long-run-mcmc.Rmd inst/examples/BUGS/long-run-mcmc.md inst/examples/BUGS/long_observation_period.Rmd inst/examples/BUGS/myers.Rmd

inst/examples/BUGS/myers.bugs

inst/examples/BUGS/myers.md inst/examples/BUGS/par_uncertainty_sdp.Rmd inst/examples/BUGS/par_uncertainty_sdp.md inst/examples/BUGS/parametric-vs-nonparametric.Rmd inst/examples/BUGS/parametric-vs-nonparametric.md inst/examples/BUGS/policy_thresholds.Rmd inst/examples/BUGS/policy_thresholds.md inst/examples/BUGS/process-noise-only.Rmd inst/examples/BUGS/process-noise-only.md inst/examples/BUGS/short_observation_period.Rmd inst/examples/BUGS/short_observation_period.md inst/examples/BUGS/step_ahead_plots.Rmd inst/examples/BUGS/step_ahead_plots.md inst/examples/admb-example.Rmd inst/examples/admb-example.md inst/examples/adp-intro.Rmd inst/examples/adp-intro.md inst/examples/aic_replicates.Rmd inst/examples/aic_replicates.md inst/examples/allee.Rmd inst/examples/allee.md inst/examples/beverton_holt_data.Rmd inst/examples/beverton_holt_data.md inst/examples/comparing-methods.Rmd inst/examples/comparing-methods.md inst/examples/gaussian-process-basics.Rmd inst/examples/gaussian-process-basics.md inst/examples/gaussian-process-control.R inst/examples/gaussian-process-shiny.Rmd inst/examples/gp_mcmc_example.Rmd inst/examples/gp_mcmc_example.md inst/examples/hyperparameter-optimization.Rmd inst/examples/hyperparameter-optimization.md inst/examples/may79-example.Rmd inst/examples/may79-example.md inst/examples/mcmc-gp.Rmd inst/examples/mcmc-gp.md

inst/examples/model_gen.tpl

inst/examples/multidimensional.Rmd inst/examples/multidimensional.md inst/examples/myer-example.Rmd inst/examples/myer-example.md inst/examples/myers-exploration.Rmd inst/examples/myers-exploration.md inst/examples/pomp-example.Rmd inst/examples/pomp-example.md inst/examples/reed-example.Rmd inst/examples/reed-example.md inst/examples/ricker-oscillate-example.Rmd inst/examples/ricker-oscillate-example.md inst/examples/scaling.Rmd inst/examples/scaling.md inst/examples/scenarios-table.R inst/examples/semi-analytic-posteriors.Rmd inst/examples/semi-analytic-posteriors.md inst/examples/sensitivity.R inst/examples/sensitivity.Rmd inst/examples/sequential-method.Rmd inst/examples/sequential-method.md inst/examples/small-allee-plots.R inst/examples/small-allee.R inst/examples/small-noise-plots.R inst/examples/small-noise.R inst/examples/tgp-priors.Rmd inst/examples/tgp-priors.md man/f_transition_matrix.Rd man/gp_fit.Rd man/gp_mcmc.Rd man/gp_predict.Rd man/gp_transition_matrix.Rd man/par_F.Rd man/plot.gpfit.Rd man/summary_gp_mcmc.Rd

manuscripts/.dockerignore

manuscripts/Dockerfile

manuscripts/Makefile

manuscripts/README.md

manuscripts/components/data/figure1.csv

manuscripts/components/data/figure2.csv

manuscripts/components/data/figure3.csv

manuscripts/components/data/figure4.csv

manuscripts/components/data/figure5.csv

manuscripts/components/data/figureS2a.csv

manuscripts/components/data/figureS2b.csv

manuscripts/components/data/training_data.csv

manuscripts/components/ecology.csl

manuscripts/components/elsarticle.cls

manuscripts/components/elsarticle.latex

manuscripts/components/external-chunks.R

manuscripts/components/pandoc_config.txt

manuscripts/components/references.bib

manuscripts/components/restore-cache.R manuscripts/components/sensitivity-trends.R manuscripts/components/sensitivity.R manuscripts/manuscript.Rmd manuscripts/manuscript.pdf

manuscripts/manuscript.tex

manuscripts/media-summary.txt

manuscripts/submit.tex

manuscripts/supplement.Rmd

manuscripts/supplement.tex

tests/testthat.R tests/testthat/test-gp.R

cboettig/nonparametric-bayes documentation built on May 13, 2019, 2:09 p.m.