#' getExperimentSamplesRawData - Gets raw data for an experiment container.
#'
#'\code{getExperimentSamplesRawData } Gets raw data for a experiment container identified by barcode.
#'
#'@param coreApi coreApi object with valid jsessionid
#'@param experimentType experiment type for sample
#'@param assayType assay type for sample
#'@param experimentContainerBarcode experiment sample container of entity to get
#'@param dataName assay data name to retrive as configured in the assay.
#'@param useVerbose TRUE or FALSE to indicate if verbose options should be used in http call
#'@return returns a list $entity contains data frame with derived experiment sample barcodes concentration,
#' and assay raw data. $response contains the entire http response
#'@export
#'@examples
#'\dontrun{
#' api<-CoreAPIV2::CoreAPI("PATH TO JSON FILE")
#' login<- CoreAPIV2::authBasic(api)
#' response<- getExperimentSamplesRawData (login$coreApi,"ExperimentContainerBarcode",useVerbose = FALSE)
#' rawdata <- response$entity
#' CoreAPIV2:logOut(login$coreApi)
#' }
#'@author Craig Parman ngsAnalytics, ngsanalytics.com
#'@description \code{ getExperimentSamplesRawData } Gets raw data for a experiment container identified by barcode.
getExperimentSamplesRawData <-
function (coreApi,
experimentContainerBarcode,
useVerbose = FALSE)
{
resource <- "RAW_DATA"
query <- paste0(
"?$filter=EXPERIMENT_CONTAINER/Name%20eq%20'",
experimentContainerBarcode,
"'"
)
header <- c(Accept = "application/json")
response <-
CoreAPIV2::apiGET(
coreApi,
resource = resource,
query = query,
headers = header,
useVerbose = useVerbose
)
dataValues <-lapply(response$content,unlist)
dataValues <- lapply(dataValues, function(x) {names(x) <- NULL
return(x) })
dataValues <- t(matrix(unlist(dataValues), ncol = length(response$content), nrow =length(response$content[[1]]) ))
colnames(dataValues) <- names(response$content[[1]])
dataValues <- as.data.frame(dataValues)
list(entity = dataValues, response = response$response)
}
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