runSVA: run SVA
In cmatKhan/brentlabRnaSeqTools: A Collection of Functions to Interact with the Brentlab RNASeq Database
View source: R/surrogate_variables.R
Description
run SVA
Usage
1
runSVA(raw_counts, null_model_matrix, full_model_matrix)
Arguments
raw_counts
raw gene counts in the shape gene x samples where ncols matches nrow of metadata (samples == samples)
null_model_matrix
a model matrix respresenting only the batch effects. Could possibly be intercept only
full_model_matrix
the full model describing the experiment. Critically, this includes the parameter of interest
cmatKhan/brentlabRnaSeqTools documentation built on Nov. 17, 2021, 5:47 a.m.
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View source: R/surrogate_variables.R
Description
run SVA
Usage
1 | runSVA(raw_counts, null_model_matrix, full_model_matrix)
|
Arguments
raw_counts |
raw gene counts in the shape gene x samples where ncols matches nrow of metadata (samples == samples) |
null_model_matrix |
a model matrix respresenting only the batch effects. Could possibly be intercept only |
full_model_matrix |
the full model describing the experiment. Critically, this includes the parameter of interest |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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