reducedDimS: Retrieves the coordinates of each cell in the...
In cole-trapnell-lab/monocle-release: Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
Description
Usage
Arguments
Value
Examples
View source: R/methods-CellDataSet.R
Description
Reducing the dimensionality of the expression data is a core step in the Monocle
workflow. After you call reduceDimension(), this function will return the new
coordinates of your cells in the reduced space.
Usage
1
reducedDimS(cds)
Arguments
cds
A CellDataSet object.
Value
A matrix, where rows are cell coordinates and columns correspond to dimensions of the
reduced space.
Examples
1
2
3
4
## Not run:
S <- reducedDimS(HSMM)
## End(Not run)
cole-trapnell-lab/monocle-release documentation built on May 13, 2019, 8:50 p.m.
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Description Usage Arguments Value Examples
View source: R/methods-CellDataSet.R
Description
Reducing the dimensionality of the expression data is a core step in the Monocle workflow. After you call reduceDimension(), this function will return the new coordinates of your cells in the reduced space.
Usage
1 | reducedDimS(cds)
|
Arguments
cds |
A CellDataSet object. |
Value
A matrix, where rows are cell coordinates and columns correspond to dimensions of the reduced space.
Examples
1 2 3 4 | ## Not run:
S <- reducedDimS(HSMM)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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