API for computational-genomics-lab/motifFUN
Searching user-defined motif along with functional annotation filtering criteria
| Global functions | |
|---|---|
| HMM_fasta | Man page |
| check_file_existance | Man page |
| check_signalp_version | Man page |
| check_signalp_version_match | Man page |
| external_programe_existance | Man page |
| fasta_to_stockholm | Man page |
| get_mafft | Man page |
| get_orf | Man page |
| get_signalp | Man page |
| get_targetp | Man page |
| get_tmhmm | Man page |
| hmm.plot | Man page |
| hmm.search | Man page |
| hmm_build | Man page |
| hmm_press | Man page |
| hmm_search | Man page |
| hmmbuild | Man page |
| hmmpress | Man page |
| hmmsearch | Man page |
| modify_filename | Man page |
| orf_discard | Man page |
| parse_file | Man page |
| pattern.search | Man page |
| prepare_inputdata | Man page |
| prepare_inputdata_signalp | Man page |
| reading_hmm.results | Man page |
| run_mafft | Man page |
| run_signalp | Man page |
| run_targetp | Man page |
| run_tmhmm | Man page |
| siganlp5_summary | Man page |
| summary_motifs | Man page |
| summary_signalp3 | Man page |
| targetp_summary | Man page |
| tmhmm_summary | Man page |
