pattern.search: Searching for motifs using regular expressions
In computational-genomics-lab/motifFUN: Searching user-defined motif along with functional annotation filtering criteria
Description
Usage
Arguments
Value
Description
This function searching the motif of interest by user defined regular expression against input fasta sequences.
Usage
1
pattern.search(fasta.file = NULL, reg.pat = NULL)
Arguments
fasta.file
Provide protien sequence fasta file.
reg.pat
Provide R regular expression pattern for searching motifs.
Value
A list contain motif sequences and motif dataframe
@examples
pattern.search(fasta.file = NULL, reg.pat = NULL)
computational-genomics-lab/motifFUN documentation built on June 4, 2019, 7:52 a.m.
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Description Usage Arguments Value
Description
This function searching the motif of interest by user defined regular expression against input fasta sequences.
Usage
1 | pattern.search(fasta.file = NULL, reg.pat = NULL)
|
Arguments
fasta.file |
Provide protien sequence fasta file. |
reg.pat |
Provide R regular expression pattern for searching motifs. |
Value
A list contain motif sequences and motif dataframe
@examples
pattern.search(fasta.file = NULL, reg.pat = NULL)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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