get_signalp: Predicts the secretory proteins

In computational-genomics-lab/motifFUN: Searching user-defined motif along with functional annotation filtering criteria

Description

This function predicts the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms(eukaryotes,gram+,gram-).

Usage

get_signalp(signalp.path = NULL, signalp.version = NULL,
  input_file = NULL, org.type = NULL)

Arguments

signalp.path	Localpath of folder containing signalp binary excutable file or the the the excutable file itself, if path not specified, then signalp must be in program search path
signalp.version	please provide signalp version to use
input_file	Please provide fasta input file
org.type	Provide organism type [euk,gram+,gram-]

Value

Provide dataframe its contain summary of the signalp results file

@examples

signalp <- get_signalp(signalp.path = NULL, signalp.version = NULL, input_file = NULL, org.type = NULL)

computational-genomics-lab/motifFUN documentation built on June 4, 2019, 7:52 a.m.