orf_discard: Descard ORF file

In computational-genomics-lab/motifFUN: Searching user-defined motif along with functional annotation filtering criteria

Description

This function descard the ORF protien sequences based on its length. The length cutoff is managed by lowerlimit and upperlimit.

Usage

orf_discard(orf_file = NULL, upper.limit = NULL, lower.limit = NULL,
  output_file = NULL)

Arguments

orf_file	ORF file created from getorf function.
upper.limit	enter sequnece length it will descard the sequences within specified range.
lower.limit	enter sequence length.
output_file	output filename defined by user.

Value

This function returns output file name

@examples

orf_discard(orf_file= "filename", upper.limit= 1800, lower.limit= 100, output_file = NULL)

computational-genomics-lab/motifFUN documentation built on June 4, 2019, 7:52 a.m.