summary_motifs: Returns non-redundant sequences from hmm.search or...

In computational-genomics-lab/motifFUN: Searching user-defined motif along with functional annotation filtering criteria

Description

This function summarize the results from pattern.search or hmm.search along with functional domains.

Usage

summary_motifs(hmm.result, reg.pat = NULL, signalp_version = NULL,
  input_file = NULL)

Arguments

hmm.result	A list of SeqFastadna objects obtained from regex.search or hmm.search
reg.pat	A character string indicating the PATT_REG pattern for the motif. The specification of the PATT_REG pattern in must be in regex format.
signalp_version	signalp version
input_file	file name used in the functional domains(signalp, targtp, tmhmm)

Value

returns summary table

Examples

## Not run: 

summary_motifs(hmm.result, reg.pat=NULL, signalp_version = NULL, input_file = NULL)

## End(Not run)

computational-genomics-lab/motifFUN documentation built on June 4, 2019, 7:52 a.m.