get_mafft: MAFFT Alignment
In computational-genomics-lab/motifFUN: Searching user-defined motif along with functional annotation filtering criteria
Description
Usage
Arguments
Value
Description
This function is perfoms multiple sequence alignment when alignment file is not provided by user
Usage
1
2
Arguments
alignment.file
MAFFT alignment resulted file
sequences
PATT_REG sequence reading and stored in sequences
mafft.path
complete path of MAFFT
num.threads
Number of threads to be used by MAFFT.
Value
Resulted output file name
@examples
get_mafft(alignment.file = NULL, sequences = NULL, mafft.path = NULL, num.threads = NULL)
computational-genomics-lab/motifFUN documentation built on June 4, 2019, 7:52 a.m.
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Description Usage Arguments Value
Description
This function is perfoms multiple sequence alignment when alignment file is not provided by user
Usage
1 2 |
Arguments
alignment.file |
MAFFT alignment resulted file |
sequences |
PATT_REG sequence reading and stored in sequences |
mafft.path |
complete path of MAFFT |
num.threads |
Number of threads to be used by MAFFT. |
Value
Resulted output file name
@examples get_mafft(alignment.file = NULL, sequences = NULL, mafft.path = NULL, num.threads = NULL)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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