get_tmhmm: Prediction of transmembrane helices in proteins

In computational-genomics-lab/motifFUN: Searching user-defined motif along with functional annotation filtering criteria

Description

This function Predicts the presence of transmembrane helices and extract and returns protiens with no transmembrane helices

Usage

get_tmhmm(tmhmm.path = NULL, file = NULL)

Arguments

tmhmm.path	Localpath of folder containing tmhmm binary excutable file or the excutable file itself, if path not specified, then tmhmm must be in program search path
file	Provide input fasta file name

Value

Returns dataframe which contain summary of tmhmm result file

Examples

 ## Not run: 

tmhmm_data <- get_tmhmm(tmhmm.path = NULL, file = NULL)

## End(Not run)

computational-genomics-lab/motifFUN documentation built on June 4, 2019, 7:52 a.m.