hmm_build: HMM build
In computational-genomics-lab/motifFUN: Searching user-defined motif along with functional annotation filtering criteria
Description
Usage
Arguments
Value
Description
This function is build model by using MAFFT alignment sequence file
Usage
1
Arguments
hmm_path
complete path of HMMER
seed
The seed to used with HMMER commands. Set this to get the same output each time
mafft_out
MAFFT alignment output file name
Value
Resulted output file name
@examples
hmm_build(hmm_path = NULL, seed = NULL, mafft_out = NULL)
computational-genomics-lab/motifFUN documentation built on June 4, 2019, 7:52 a.m.
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Description Usage Arguments Value
Description
This function is build model by using MAFFT alignment sequence file
Usage
1 |
Arguments
hmm_path |
complete path of HMMER |
seed |
The seed to used with HMMER commands. Set this to get the same output each time |
mafft_out |
MAFFT alignment output file name |
Value
Resulted output file name
@examples hmm_build(hmm_path = NULL, seed = NULL, mafft_out = NULL)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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