reading_hmm.results: Reading HMM resulted file

In computational-genomics-lab/motifFUN: Searching user-defined motif along with functional annotation filtering criteria

Description

hmmsearch is used to search one or more profiles against a sequence database.

Usage

reading_hmm.results(original_seq = NULL, hmmsearch.out = NULL,
  hmmbuild.out = NULL, regex.seq = NULL, save.alignment = FALSE)

Arguments

original_seq	The absolute path for the original six-frame translation FASTA file
hmmsearch.out	hmmsearch output file
hmmbuild.out	hmmbuild output file name
regex.seq	pattern search function returns the sequence stored in PATT_REG variable.
save.alignment	alignment file

Value

returns total sequence (HMM, PATT_REG)

@examples reading_hmm.results(original_seq = NULL, hmmsearch.out = NULL, hmmbuild.out = NULL, regex.seq = NULL, save.alignment = FALSE)

computational-genomics-lab/motifFUN documentation built on June 4, 2019, 7:52 a.m.