get_orf: Find and extract open reading frames (ORFs) from nucleotide...

In computational-genomics-lab/motifFUN: Searching user-defined motif along with functional annotation filtering criteria

Description

This function finds and outputs the sequences of open reading frames (ORFs) in one or more nucleotide sequences

Usage

get_orf(getorf.path = NULL, input.file = NULL, output.file = NULL,
  error = TRUE, verbose = FALSE)

Arguments

getorf.path	Path of getorf excutable file path,path.getorf excutable file will provide along with the package,if path is null then this function will take default path from syste path.
input.file	inputfile should have DNA query sequence filename.
output.file	name of output filename.
error	If TRUE, throw an error if programs is not installed.
verbose	If TRUE, print progress reports.

Value

return output filename

@examples

get_orf( getorf.path=NULL, input.file="filename", output.file = NULL)

computational-genomics-lab/motifFUN documentation built on June 4, 2019, 7:52 a.m.