Files in computational-genomics-lab/motifFUN

Searching user-defined motif along with functional annotation filtering criteria

R/general_function.R R/getorf.R R/globals.R R/hmmsearch.R R/orfdiscard.R R/parse.R R/patternsearch.R R/plot.R R/signalp.R R/summary.R R/targetp.R R/thmm.R README.md man/HMM_fasta.Rd man/check_file_existance.Rd man/check_signalp_version.Rd man/check_signalp_version_match.Rd man/external_programe_existance.Rd man/fasta_to_stockholm.Rd man/get_mafft.Rd man/get_orf.Rd man/get_signalp.Rd man/get_targetp.Rd man/get_tmhmm.Rd man/hmm.plot.Rd man/hmm.search.Rd man/hmm_build.Rd man/hmm_press.Rd man/hmm_search.Rd man/hmmbuild.Rd man/hmmpress.Rd man/hmmsearch.Rd man/modify_filename.Rd man/orf_discard.Rd man/parse_file.Rd man/pattern.search.Rd man/prepare_inputdata.Rd man/prepare_inputdata_signalp.Rd man/reading_hmm.results.Rd man/run_mafft.Rd man/run_signalp.Rd man/run_targetp.Rd man/run_tmhmm.Rd man/siganlp5_summary.Rd man/summary_motifs.Rd man/summary_signalp3.Rd man/targetp_summary.Rd man/tmhmm_summary.Rd vignettes/htmlmotiffun.Rmd