API for connorhknight/IBRAP
Integrated Benchmarking scRNA-seq Analytical Pipeline (IBRAP)

Global functions
.convert_subset_index Source code
.onAttach Source code
.onLoad Source code
IBRAP-object Man page
Read10X_output Man page Source code
[,IBRAP,ANY,ANY,ANY-method Man page
add.cell.cycle Man page Source code
add.feature.score Man page Source code
as.csc.matrix Man page
as_list_methods Man page
as_matrix Man page Source code
as_matrix_transpose Man page Source code
benchmark.clustering Man page Source code
benchmark.integration Man page Source code
cell_metadata Man page Source code
createIBRAPobject Man page Source code
df_to_dgCMatrix Man page Source code
dim Man page
dollar Man page
feature_metadata Man page Source code
fetchResults Source code
filter_IBRAP Man page Source code
find_percentage_genes Man page Source code
integrate.cluster.benchmarking.results Man page Source code
isUnique Man page Source code
merge Man page
methods-object Man page
ncol Man page
nrow Man page
perform.GO.enrichment Man page Source code
perform.bbknn Man page Source code
perform.celltalker Man page Source code
perform.decontX Man page Source code
perform.diffexp Man page Source code
perform.diffexp.all Man page Source code
perform.diffusion.map Man page Source code
perform.graph.cluster Man page Source code
perform.graph.subclustering Man page Source code
perform.gsea Man page Source code
perform.harmony Man page Source code
perform.lvish Man page Source code
perform.nn Man page Source code
perform.pca Man page Source code
perform.reduction.kmeans Man page Source code
perform.sc3.reduction.cluster Man page Source code
perform.sc3.slot.cluster Man page Source code
perform.scanorama Man page Source code
perform.scanpy Man page Source code
perform.scran Man page Source code
perform.scrublet Man page Source code
perform.sct Man page Source code
perform.sctype Man page Source code
perform.seurat.cca Man page
perform.seurat.integration Man page Source code
perform.singleR.annotation Man page Source code
perform.slingshot.trajectory Man page Source code
perform.tpm Man page Source code
perform.tsne Man page Source code
perform.umap Man page Source code
plot.GO.output Man page Source code
plot.QC.scatter Man page Source code
plot.QC.vln Man page Source code
plot.cluster.benchmarking Source code
plot.dot.plot Man page Source code
plot.features Man page Source code
plot.integration.benchmarking Source code
plot.reduced.dim Man page Source code
plot.reduced.dim. Man page
plot.reduced.dim.interactive Man page Source code
plot.slingshot Man page Source code
plot.variance Man page Source code
plot.vln Man page Source code
prepare.for.dittoSeq Man page Source code
prepare.reticulate Man page Source code
remove.hvgs Man page Source code
replaceResults Man page Source code
rownames Man page
run.IBRAP.rshiny Man page Source code
showObjectContents Man page Source code
splitIBRAP Man page Source code
connorhknight/IBRAP documentation built on March 9, 2023, 7:01 p.m.