API for connorhknight/IBRAP
Integrated Benchmarking scRNA-seq Analytical Pipeline (IBRAP)
| Global functions | |
|---|---|
| .convert_subset_index | Source code |
| .onAttach | Source code |
| .onLoad | Source code |
| IBRAP-object | Man page |
| Read10X_output | Man page Source code |
| [,IBRAP,ANY,ANY,ANY-method | Man page |
| add.cell.cycle | Man page Source code |
| add.feature.score | Man page Source code |
| as.csc.matrix | Man page |
| as_list_methods | Man page |
| as_matrix | Man page Source code |
| as_matrix_transpose | Man page Source code |
| benchmark.clustering | Man page Source code |
| benchmark.integration | Man page Source code |
| cell_metadata | Man page Source code |
| createIBRAPobject | Man page Source code |
| df_to_dgCMatrix | Man page Source code |
| dim | Man page |
| dollar | Man page |
| feature_metadata | Man page Source code |
| fetchResults | Source code |
| filter_IBRAP | Man page Source code |
| find_percentage_genes | Man page Source code |
| integrate.cluster.benchmarking.results | Man page Source code |
| isUnique | Man page Source code |
| merge | Man page |
| methods-object | Man page |
| ncol | Man page |
| nrow | Man page |
| perform.GO.enrichment | Man page Source code |
| perform.bbknn | Man page Source code |
| perform.celltalker | Man page Source code |
| perform.decontX | Man page Source code |
| perform.diffexp | Man page Source code |
| perform.diffexp.all | Man page Source code |
| perform.diffusion.map | Man page Source code |
| perform.graph.cluster | Man page Source code |
| perform.graph.subclustering | Man page Source code |
| perform.gsea | Man page Source code |
| perform.harmony | Man page Source code |
| perform.lvish | Man page Source code |
| perform.nn | Man page Source code |
| perform.pca | Man page Source code |
| perform.reduction.kmeans | Man page Source code |
| perform.sc3.reduction.cluster | Man page Source code |
| perform.sc3.slot.cluster | Man page Source code |
| perform.scanorama | Man page Source code |
| perform.scanpy | Man page Source code |
| perform.scran | Man page Source code |
| perform.scrublet | Man page Source code |
| perform.sct | Man page Source code |
| perform.sctype | Man page Source code |
| perform.seurat.cca | Man page |
| perform.seurat.integration | Man page Source code |
| perform.singleR.annotation | Man page Source code |
| perform.slingshot.trajectory | Man page Source code |
| perform.tpm | Man page Source code |
| perform.tsne | Man page Source code |
| perform.umap | Man page Source code |
| plot.GO.output | Man page Source code |
| plot.QC.scatter | Man page Source code |
| plot.QC.vln | Man page Source code |
| plot.cluster.benchmarking | Source code |
| plot.dot.plot | Man page Source code |
| plot.features | Man page Source code |
| plot.integration.benchmarking | Source code |
| plot.reduced.dim | Man page Source code |
| plot.reduced.dim. | Man page |
| plot.reduced.dim.interactive | Man page Source code |
| plot.slingshot | Man page Source code |
| plot.variance | Man page Source code |
| plot.vln | Man page Source code |
| prepare.for.dittoSeq | Man page Source code |
| prepare.reticulate | Man page Source code |
| remove.hvgs | Man page Source code |
| replaceResults | Man page Source code |
| rownames | Man page |
| run.IBRAP.rshiny | Man page Source code |
| showObjectContents | Man page Source code |
| splitIBRAP | Man page Source code |
