AAindexData: List of 544 physicochemical and biological properties for the...
In crarlus/paprbag: Pathogenicity Prediction of Bacterial Genomes
Description
Usage
Format
Source
References
Description
Data were imported from seqinr package. Refer to the aaindex in seqinr for more details. See the reference section to cite this database in a publication.
Usage
1
Format
A data.frame with 544 rows and 26 columns
Each row represents a property
Columns 1 to 6 give information about the property "AccNo" "PropDesc" "LITDBNo" "Author" "ArtTitle" "JournalRef"
Columns 7 to 26 give the property's values for the 20 amino acids
Source
http://www.genome.jp/aaindex
References
From the original aaindex documentation:
Please cite the following references when making use of the database:
Kawashima, S. and Kanehisa, M. (2000) AAindex: amino acid index database. Nucleic Acids Res., 28:374.
Tomii, K. and Kanehisa, M. (1996) Analysis of amino acid indices and mutation matrices for sequence comparison and structure prediction of proteins. Protein Eng., 9:27-36.
Nakai, K., Kidera, A., and Kanehisa, M. (1988) Cluster analysis of amino acid indices for prediction of protein structure and function. Protein Eng. 2:93-100.
crarlus/paprbag documentation built on May 14, 2019, 11:31 a.m.
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Description Usage Format Source References
Description
Data were imported from seqinr package. Refer to the aaindex in seqinr for more details. See the reference section to cite this database in a publication.
Usage
1 |
Format
A data.frame with 544 rows and 26 columns Each row represents a property Columns 1 to 6 give information about the property "AccNo" "PropDesc" "LITDBNo" "Author" "ArtTitle" "JournalRef" Columns 7 to 26 give the property's values for the 20 amino acids
Source
http://www.genome.jp/aaindex
References
From the original aaindex documentation: Please cite the following references when making use of the database:
Kawashima, S. and Kanehisa, M. (2000) AAindex: amino acid index database. Nucleic Acids Res., 28:374. Tomii, K. and Kanehisa, M. (1996) Analysis of amino acid indices and mutation matrices for sequence comparison and structure prediction of proteins. Protein Eng., 9:27-36. Nakai, K., Kidera, A., and Kanehisa, M. (1988) Cluster analysis of amino acid indices for prediction of protein structure and function. Protein Eng. 2:93-100.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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