UpdateFeatures: Update all features in a specified folder

In crarlus/paprbag: Pathogenicity Prediction of Bacterial Genomes

Description

Update all features in a specified folder. Save features in subfolder "Features". Backup old features if desired.

Usage

UpdateFeatures(Path2ReadFiles, savePath = file.path(Path2ReadFiles,
  "Features"), Cores = 1, Backup = F, pattern = "fasta$|mason$",
  verbose = T, ...)

Arguments

Path2ReadFiles	A path to the location of the read files
savePath	Path where features should be saved to (default: Path2ReadFiles/Features)
Cores	Multicore functionality for linux systems.
Backup	Do you want to backup old features
pattern	File extension of read files. Used as regex filter (default "fasta$|mason$")
verbose	Write a logfile ("FeatureCreation.log") and verbose output
...	Parameters passed to function CreateFeaturesFromReads
AAindex_Selection	Parameter for Features

Value

Returns TRUE if completed

Author(s)

Carlus Deneke

See Also

Wraps CreateFeaturesFromReads

crarlus/paprbag documentation built on May 14, 2019, 11:31 a.m.