Predict.ReadSet: Make a prediction from a set of reads

In crarlus/paprbag: Pathogenicity Prediction of Bacterial Genomes

Usage

Predict.ReadSet(ForestObject, ReadObject, Feature.Configuration = NULL,
  verbose = F, num.threads = NULL, ...)

Arguments

ForestObject	A random forest object of class 'ranger'
ReadObject	A DNAStringSet object containing the read sequences
Feature.Configuration	A list containing all feature options. If set to NULL then features are extracted from forest object. See 'details' for more information. (Default = NULL)
verbose	Print verbose output
num.threads	Number of threads used for ranger prediction. Default is number of CPUs available.

Details

If the user supplies the Feature.Configuration it should contain the following list objects

• "parameter 1"Stuff1

• "parameter 2"Stuff2

Value

A prediction object of class 'ranger.prediction'

Author(s)

Carlus Deneke

See Also

predict.ranger

Predict.ReadSet.fromFiles

crarlus/paprbag documentation built on May 14, 2019, 11:31 a.m.