GetAAindexStats: Get the AAindex property of a peptide sequence

In crarlus/paprbag: Pathogenicity Prediction of Bacterial Genomes

Description

For a peptide sequence, obtain properties associated to its amino acid content

Usage

GetAAindexStats(AAfreq, AAindex_Selection)

Arguments

AAfreq	The relative frequency of amino acids in the peptide sequence obtained from function GetMonoPeptideFrequency
Vector	of accession numbers to select a subset of the 544 amino acid indices

Value

A data.frame containing the desired amino acid index stats (columns) for each sequence submitted (rows)

Author(s)

Carlus Deneke

References

Adapted from aaindex in seqinr

Please cite the following references when making use of the database:

Kawashima, S. and Kanehisa, M. (2000) AAindex: amino acid index database. Nucleic Acids Res., 28:374.

crarlus/paprbag documentation built on May 14, 2019, 11:31 a.m.