GetOligonucleotideFrequency: Get the ologonuleotide frequency
In crarlus/paprbag: Pathogenicity Prediction of Bacterial Genomes
Description
Usage
Arguments
Value
Author(s)
View source: R/GetOligonucleotideFrequency.R
Description
Obtain the frequency of oligonucleotides in a DNA sequence for different k-mer sizes
Usage
1
GetOligonucleotideFrequency(Seq, k = 1, prob = F, symmetric = F)
Arguments
Seq
A DNAStringSet object, i.e. a set of DNA sequences
k
The k-mer size
prob
Return the relative frequency
symmetric
Do you want to reduce number of kmers by combining forard kmers and their reverse-complements? (Default: FALSE)
Value
The ologonuleotide frequency for each sequence submitted for the choice of k
Author(s)
Carlus Deneke
crarlus/paprbag documentation built on May 14, 2019, 11:31 a.m.
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Description Usage Arguments Value Author(s)
View source: R/GetOligonucleotideFrequency.R
Description
Obtain the frequency of oligonucleotides in a DNA sequence for different k-mer sizes
Usage
1 | GetOligonucleotideFrequency(Seq, k = 1, prob = F, symmetric = F)
|
Arguments
Seq |
A DNAStringSet object, i.e. a set of DNA sequences |
k |
The k-mer size |
prob |
Return the relative frequency |
symmetric |
Do you want to reduce number of kmers by combining forard kmers and their reverse-complements? (Default: FALSE) |
Value
The ologonuleotide frequency for each sequence submitted for the choice of k
Author(s)
Carlus Deneke
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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