Description Usage Arguments Value Author(s)
View source: R/GetOligonucleotideFrequency.R
Obtain the frequency of oligonucleotides in a DNA sequence for different k-mer sizes
1 | GetOligonucleotideFrequency(Seq, k = 1, prob = F, symmetric = F)
|
Seq |
A DNAStringSet object, i.e. a set of DNA sequences |
k |
The k-mer size |
prob |
Return the relative frequency |
symmetric |
Do you want to reduce number of kmers by combining forard kmers and their reverse-complements? (Default: FALSE) |
The ologonuleotide frequency for each sequence submitted for the choice of k
Carlus Deneke
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