GetOligonucleotideFrequency: Get the ologonuleotide frequency

Description Usage Arguments Value Author(s)

View source: R/GetOligonucleotideFrequency.R

Description

Obtain the frequency of oligonucleotides in a DNA sequence for different k-mer sizes

Usage

1
GetOligonucleotideFrequency(Seq, k = 1, prob = F, symmetric = F)

Arguments

Seq

A DNAStringSet object, i.e. a set of DNA sequences

k

The k-mer size

prob

Return the relative frequency

symmetric

Do you want to reduce number of kmers by combining forard kmers and their reverse-complements? (Default: FALSE)

Value

The ologonuleotide frequency for each sequence submitted for the choice of k

Author(s)

Carlus Deneke


crarlus/paprbag documentation built on May 14, 2019, 11:31 a.m.