GetBestTranslatedSequence: Translate nucleotide sequence into a amino acid sequence
In crarlus/paprbag: Pathogenicity Prediction of Bacterial Genomes
Description
Usage
Arguments
Value
Author(s)
View source: R/GetBestTranslatedSequence.R
Description
Translate a nulceotide sequence into all possible 6-frames and decide for the frame with the fewest number of stop codons
Usage
1
GetBestTranslatedSequence(Reads)
Arguments
Reads
A DNAStringSet Object
Value
Returns a list containing 'BestSeq' (Peptide sequence with the lowest number of stop codons),'MinStopCodons' (Number of stop codons in the selected frame), 'Frame' (putative frame),'Strand' (putative strand)
Author(s)
Carlus Deneke
crarlus/paprbag documentation built on May 14, 2019, 11:31 a.m.
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Description Usage Arguments Value Author(s)
View source: R/GetBestTranslatedSequence.R
Description
Translate a nulceotide sequence into all possible 6-frames and decide for the frame with the fewest number of stop codons
Usage
1 | GetBestTranslatedSequence(Reads)
|
Arguments
Reads |
A DNAStringSet Object |
Value
Returns a list containing 'BestSeq' (Peptide sequence with the lowest number of stop codons),'MinStopCodons' (Number of stop codons in the selected frame), 'Frame' (putative frame),'Strand' (putative strand)
Author(s)
Carlus Deneke
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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