BestUco: Estimate the Codon usage from a sequence
In crarlus/paprbag: Pathogenicity Prediction of Bacterial Genomes
Description
Usage
Arguments
Value
Author(s)
See Also
Description
Obtain the Codon Usage from the estimated Best Frame
Usage
1
BestUco(Seq, Frame, Strand)
Arguments
Seq
A DNAStringSet object
Frame
Translation frame (0,1,2) of the putative peptide sequence
Strand
Strand ('r' = reverse strand, 'f' = forward strand)
Value
Returns a data.frame of the codon usage, i.e. the relative frequency of each codon (columns), for each sequence (rows)
Author(s)
Carlus Deneke
See Also
crarlus/paprbag documentation built on May 14, 2019, 11:31 a.m.
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Description Usage Arguments Value Author(s) See Also
Description
Obtain the Codon Usage from the estimated Best Frame
Usage
1 | BestUco(Seq, Frame, Strand)
|
Arguments
Seq |
A DNAStringSet object |
Frame |
Translation frame (0,1,2) of the putative peptide sequence |
Strand |
Strand ('r' = reverse strand, 'f' = forward strand) |
Value
Returns a data.frame of the codon usage, i.e. the relative frequency of each codon (columns), for each sequence (rows)
Author(s)
Carlus Deneke
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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