Predict.ReadSet.fromFiles: Predict ReadSet

In crarlus/paprbag: Pathogenicity Prediction of Bacterial Genomes

Description

This function is a wrapper for function 'Predict.ReadSet'

Usage

Predict.ReadSet.fromFiles(Path2Forest, Path2ReadFiles, saveLocation,
  OutputFilename = "Output", Return.Predictions = F, Save.AsTSV = F,
  verbose = T, ...)

Arguments

Path2Forest	A path to a randomForest object of class ranger in .rds format
Path2ReadFiles	A path to a fasta file containing the read files
saveLocation	A path to the direcory where the output should be written to
OutputFilename	The name of the outputfile (without file extension) Default = "Output")
Return.Predictions	Should the predictions be returned
Save.AsTSV	Should the output saved in tsv (tab separated format) instead of rds format ?
...	Further arguments passed to function 'Predict.ReadSet'

Value

Either the predictions (if Return.Predictions == T ) or TRUE/FALSE if Outputfile exists #' @seealso predict.ranger

Author(s)

Carlus Deneke

See Also

Predict.ReadSet

crarlus/paprbag documentation built on May 14, 2019, 11:31 a.m.