FindPatternsIn6frames: Find patterns in all 6-frame translations of a read
In crarlus/paprbag: Pathogenicity Prediction of Bacterial Genomes
Description
Usage
Arguments
Details
Value
Author(s)
View source: R/FindPatternsIn6frames.R
Description
For a list of read sequences, translate into all 6-frames and search for patterns in each frame
Usage
1
FindPatternsIn6frames(Reads_Seq, Patterns, Prefix = "AAPattern")
Arguments
Reads_Seq
DNAStringObject
Patterns
Vector of patterns
Prefix
How should the columns of pattern matches be called
Details
The matches in the individual frames are combined
Value
A data.frame containing the matched patterns (columns)
Author(s)
Carlus Deneke
crarlus/paprbag documentation built on May 14, 2019, 11:31 a.m.
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Description Usage Arguments Details Value Author(s)
View source: R/FindPatternsIn6frames.R
Description
For a list of read sequences, translate into all 6-frames and search for patterns in each frame
Usage
1 | FindPatternsIn6frames(Reads_Seq, Patterns, Prefix = "AAPattern")
|
Arguments
Reads_Seq |
DNAStringObject |
Patterns |
Vector of patterns |
Prefix |
How should the columns of pattern matches be called |
Details
The matches in the individual frames are combined
Value
A data.frame containing the matched patterns (columns)
Author(s)
Carlus Deneke
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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