FindPatternsInAAseq_wMismatches: Find patterns of amino acids
In crarlus/paprbag: Pathogenicity Prediction of Bacterial Genomes
Description
Usage
Arguments
Value
Author(s)
View source: R/FindPatternsInAAseq_wMismatches.R
Description
For a list of sequences, search the occurences of specified patterns
Usage
1
2
FindPatternsInAAseq_wMismatches(Seqs, Patterns, AllowedMismatches = 0,
aggregate = F, Prefix = "AAPattern")
Arguments
Patterns
Vector of patterns
aggregate
Should the individual pattern matches be aggregated into a single column?
Prefix
How should the columns of pattern matches be called
Seq
AAStringSet object
Value
A data.frame containing the matched patterns (columns)
Author(s)
Carlus Deneke
crarlus/paprbag documentation built on May 14, 2019, 11:31 a.m.
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Description Usage Arguments Value Author(s)
View source: R/FindPatternsInAAseq_wMismatches.R
Description
For a list of sequences, search the occurences of specified patterns
Usage
1 2 | FindPatternsInAAseq_wMismatches(Seqs, Patterns, AllowedMismatches = 0,
aggregate = F, Prefix = "AAPattern")
|
Arguments
Patterns |
Vector of patterns |
aggregate |
Should the individual pattern matches be aggregated into a single column? |
Prefix |
How should the columns of pattern matches be called |
Seq |
AAStringSet object |
Value
A data.frame containing the matched patterns (columns)
Author(s)
Carlus Deneke
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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