SpaCET.CCI.LRNetworkScore: Ligand-Receptor interaction enrichment analysis
In data2intelligence/SpaCE: Spatial Cellular Estimator for Tumors
SpaCET.CCI.LRNetworkScore R Documentation
Ligand-Receptor interaction enrichment analysis
Description
Calculate the overall intensity of L-R interactions within ST spots.
Usage
SpaCET.CCI.LRNetworkScore(SpaCET_obj, coreNo = 8)
Arguments
SpaCET_obj
An SpaCET object.
coreNo
Core number in parallel computation.
Value
An SpaCET object.
Examples
SpaCET_obj <- SpaCET.CCI.LRNetworkScore(SpaCET_obj, coreNo=8)
SpaCET.visualize.spatialFeature(SpaCET_obj, spatialType = "LRNetworkScore", spatialFeatures=c("Network_Score","Network_Score_pv"))
data2intelligence/SpaCE documentation built on Nov. 15, 2024, 12:03 a.m.
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| SpaCET.CCI.LRNetworkScore | R Documentation |
Ligand-Receptor interaction enrichment analysis
Description
Calculate the overall intensity of L-R interactions within ST spots.
Usage
SpaCET.CCI.LRNetworkScore(SpaCET_obj, coreNo = 8)
Arguments
SpaCET_obj |
An SpaCET object. |
coreNo |
Core number in parallel computation. |
Value
An SpaCET object.
Examples
SpaCET_obj <- SpaCET.CCI.LRNetworkScore(SpaCET_obj, coreNo=8)
SpaCET.visualize.spatialFeature(SpaCET_obj, spatialType = "LRNetworkScore", spatialFeatures=c("Network_Score","Network_Score_pv"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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