SpaCET.deconvolution: Deconvolve tumor ST data set

In data2intelligence/SpaCE: Spatial Cellular Estimator for Tumors

Deconvolve tumor ST data set

Description

Estimate the cell fraction of cell lineages and sub lineages.

Usage

SpaCET.deconvolution(
  SpaCET_obj,
  cancerType,
  adjacentNormal = FALSE,
  coreNo = 8
)

Arguments

SpaCET_obj	An SpaCET object.
cancerType	Cancer type of the current tumor ST dataset.
adjacentNormal	Indicate whether your sample is normal tissue adjacent to the tumor. If TURE, SpaCET will skip the stage of malignant cell inference. Default: FALSE.
coreNo	Core number in parallel computation.

Value

An SpaCET object.

Examples

SpaCET_obj <- SpaCET.deconvolution(SpaCET_obj, cancerType="BRCA", coreNo=8)

data2intelligence/SpaCE documentation built on Feb. 28, 2025, 1:16 a.m.