SpaCET.distance.to.interface: Distance to tumor border
In data2intelligence/SpaCE: Spatial Cellular Estimator for Tumors
SpaCET.distance.to.interface R Documentation
Distance to tumor border
Description
Calculate the distance of cell-cell interactions to tumor-immune interface.
Usage
SpaCET.distance.to.interface(
SpaCET_obj,
cellTypePair = c("CAF", "Macrophage M2"),
nPermutation = 1000
)
Arguments
SpaCET_obj
An SpaCET object.
cellTypePair
A pair of cell types.
nPermutation
Permutation number.
Value
A ggplot object.
Examples
SpaCET.distance.to.interface(SpaCET_obj, cellTypePair=c("CAF", "Macrophage M2"))
data2intelligence/SpaCE documentation built on April 6, 2024, 2:32 a.m.
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| SpaCET.distance.to.interface | R Documentation |
Distance to tumor border
Description
Calculate the distance of cell-cell interactions to tumor-immune interface.
Usage
SpaCET.distance.to.interface(
SpaCET_obj,
cellTypePair = c("CAF", "Macrophage M2"),
nPermutation = 1000
)
Arguments
SpaCET_obj |
An SpaCET object. |
cellTypePair |
A pair of cell types. |
nPermutation |
Permutation number. |
Value
A ggplot object.
Examples
SpaCET.distance.to.interface(SpaCET_obj, cellTypePair=c("CAF", "Macrophage M2"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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