SpaCET.quality.control: Filter spatial spots and calculate the QC metrics
In data2intelligence/SpaCE: Spatial Cellular Estimator for Tumors
SpaCET.quality.control R Documentation
Filter spatial spots and calculate the QC metrics
Description
Spots with less than 'min.genes' expressed genes would be removed.
Usage
SpaCET.quality.control(SpaCET_obj, min.genes = 1)
Arguments
SpaCET_obj
An SpaCET object.
min.genes
Minimum number of expressed genes. Default: 1.
Value
An SpaCET object.
Examples
SpaCET_obj <- SpaCET.quality.control(SpaCET_obj)
SpaCET.visualize.spatialFeature(SpaCET_obj, spatialType = "QualityControl", spatialFeatures=c("UMI","Gene"))
data2intelligence/SpaCE documentation built on Dec. 20, 2024, 1:41 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| SpaCET.quality.control | R Documentation |
Filter spatial spots and calculate the QC metrics
Description
Spots with less than 'min.genes' expressed genes would be removed.
Usage
SpaCET.quality.control(SpaCET_obj, min.genes = 1)
Arguments
SpaCET_obj |
An SpaCET object. |
min.genes |
Minimum number of expressed genes. Default: 1. |
Value
An SpaCET object.
Examples
SpaCET_obj <- SpaCET.quality.control(SpaCET_obj)
SpaCET.visualize.spatialFeature(SpaCET_obj, spatialType = "QualityControl", spatialFeatures=c("UMI","Gene"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.