SpaCET.deconvolution.malignant: Deconvolve malignant cell fraction

In data2intelligence/SpaCE: Spatial Cellular Estimator for Tumors

Deconvolve malignant cell fraction

Description

Explore different malignant cell states in tumor ST dataset.

Usage

SpaCET.deconvolution.malignant(
  SpaCET_obj,
  Malignant = "Malignant",
  malignantCutoff = 0.7,
  coreNo = 8
)

Arguments

SpaCET_obj	An SpaCET object.
Malignant	Indicates the name of malignant cell type in the major lineage layer from the deconvolution results. Default: "Malignant".
malignantCutoff	Fraction cutoff for defining spots with high abundant malignant cells. Default: 0.7.
coreNo	Core number in parallel.

Value

An SpaCET object

Examples

SpaCET_obj <- SpaCET.deconvolution.malignant(SpaCET_obj)

data2intelligence/SpaCE documentation built on Dec. 20, 2024, 1:41 a.m.