binChroms: Naively splits a chromosome into bins
In databio/GenomicDistributions: GenomicDistributions: fast analysis of genomic intervals with Bioconductor
binChroms R Documentation
Naively splits a chromosome into bins
Description
Given a list of chromosomes with corresponding sizes, this script will
produce (roughly) evenly-sized bins across the chromosomes. It does not
account for assembly gaps or the like.
Usage
binChroms(binCount, chromSizes)
Arguments
binCount
number of bins (total; *not* per chromosome)
chromSizes
a named list of size (length) for each chromosome.
Value
A data.table object assigning a bin ID to each chromosome region.
Examples
chromSizes = c(chr1=249250621, chr2=243199373, chr3=198022430)
cBins = binChroms(1000, chromSizes)
databio/GenomicDistributions documentation built on April 30, 2024, 4:34 a.m.
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| binChroms | R Documentation |
Naively splits a chromosome into bins
Description
Given a list of chromosomes with corresponding sizes, this script will produce (roughly) evenly-sized bins across the chromosomes. It does not account for assembly gaps or the like.
Usage
binChroms(binCount, chromSizes)
Arguments
binCount |
number of bins (total; *not* per chromosome) |
chromSizes |
a named list of size (length) for each chromosome. |
Value
A data.table object assigning a bin ID to each chromosome region.
Examples
chromSizes = c(chr1=249250621, chr2=243199373, chr3=198022430)
cBins = binChroms(1000, chromSizes)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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