calcNeighborDist: Group regions from the same chromosome together and calculate...
In databio/GenomicDistributions: GenomicDistributions: fast analysis of genomic intervals with Bioconductor
View source: R/neighbor-distances.R
calcNeighborDist R Documentation
Group regions from the same chromosome together and
calculate the distances of a region to its upstream and
downstream neighboring regions.
Distances are then lumped into a numeric vector.
Description
Group regions from the same chromosome together and
calculate the distances of a region to its upstream and
downstream neighboring regions.
Distances are then lumped into a numeric vector.
Usage
calcNeighborDist(query, correctRef = "None")
Arguments
query
A GRanges or GRangesList object.
correctRef
A string indicating the reference genome
to use if distances are corrected for the number of
regions in a regionSet.
Value
A numeric vector or list with different vectors containing the
distances of regions to their upstream/downstream neighbors.
Examples
dist = calcNeighborDist(vistaEnhancers)
databio/GenomicDistributions documentation built on April 30, 2024, 4:34 a.m.
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View source: R/neighbor-distances.R
| calcNeighborDist | R Documentation |
Group regions from the same chromosome together and calculate the distances of a region to its upstream and downstream neighboring regions. Distances are then lumped into a numeric vector.
Description
Group regions from the same chromosome together and calculate the distances of a region to its upstream and downstream neighboring regions. Distances are then lumped into a numeric vector.
Usage
calcNeighborDist(query, correctRef = "None")
Arguments
query |
A GRanges or GRangesList object. |
correctRef |
A string indicating the reference genome to use if distances are corrected for the number of regions in a regionSet. |
Value
A numeric vector or list with different vectors containing the distances of regions to their upstream/downstream neighbors.
Examples
dist = calcNeighborDist(vistaEnhancers)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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