calcNearestNeighbors: Group regions from the same chromosome together and compute...
In databio/GenomicDistributions: GenomicDistributions: fast analysis of genomic intervals with Bioconductor
View source: R/neighbor-distances.R
calcNearestNeighbors R Documentation
Group regions from the same chromosome together and
compute the distance of a region to its nearest neighbor.
Distances are then lumped into a numeric vector.
Description
Group regions from the same chromosome together and
compute the distance of a region to its nearest neighbor.
Distances are then lumped into a numeric vector.
Usage
calcNearestNeighbors(query, correctRef = "None")
Arguments
query
A GRanges or GRangesList object.
correctRef
A string indicating the reference genome
to use if Nearest neighbor distances are corrected for the
number of regions in a regionSet.
Value
A numeric vector or list of vectors containing the
distance of regions to their nearest neighbors.
Examples
Nneighbors = calcNearestNeighbors(vistaEnhancers)
databio/GenomicDistributions documentation built on April 30, 2024, 4:34 a.m.
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View source: R/neighbor-distances.R
| calcNearestNeighbors | R Documentation |
Group regions from the same chromosome together and compute the distance of a region to its nearest neighbor. Distances are then lumped into a numeric vector.
Description
Group regions from the same chromosome together and compute the distance of a region to its nearest neighbor. Distances are then lumped into a numeric vector.
Usage
calcNearestNeighbors(query, correctRef = "None")
Arguments
query |
A GRanges or GRangesList object. |
correctRef |
A string indicating the reference genome to use if Nearest neighbor distances are corrected for the number of regions in a regionSet. |
Value
A numeric vector or list of vectors containing the distance of regions to their nearest neighbors.
Examples
Nneighbors = calcNearestNeighbors(vistaEnhancers)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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