plotExpectedPartitions: Produces a barplot showing how query regions of interest are...

In databio/GenomicDistributions: GenomicDistributions: fast analysis of genomic intervals with Bioconductor

Produces a barplot showing how query regions of interest are distributed relative to the expected distribution across a given partition list

Description

Produces a barplot showing how query regions of interest are distributed relative to the expected distribution across a given partition list

Usage

plotExpectedPartitions(expectedPartitions, feature_names = NULL, pval = FALSE)

Arguments

expectedPartitions	A data.frame holding the frequency of assignment to each of the partitions, the expected number of each partition, and the log10 of the observed over expected. Produced by calcExpectedPartitions.
feature_names	Character vector with labels for the partitions (optional). By default it will use the names from the first argument.
pval	Logical indicating whether Chi-square p-values should be added for each partition.

Value

A ggplot object using a barplot to show the distribution of the query regions across a given partition list.

Examples

p = calcExpectedPartitionsRef(vistaEnhancers, "hg19")
expectedPlot = plotExpectedPartitions(p)

databio/GenomicDistributions documentation built on April 30, 2024, 4:34 a.m.