API for dlill/petab
PEtab support for R

Global functions
%>% Man page
L1_augmentL1Info Man page Source code
L1_getModelCandidates Man page Source code
L1_getParameterFormulaInjection Man page Source code
TransformEvents Source code
add_stepcolumn Man page Source code
as.data.table.reportYaml Man page Source code
cf_applyPaginate Man page Source code
cf_as.parframe Man page
cf_outputFigure Man page Source code
cf_parf_getMeta Man page Source code
cf_parf_getPars Man page Source code
cf_parf_getStepRepresentatives Man page Source code
cf_parf_metaNames Man page Source code
cf_parf_parNames Man page Source code
cf_parf_rbindlist Man page Source code
cf_parframe Man page Source code
cf_predict Man page
cf_profile_getOpenProfiles Man page Source code
cf_profile_getOptimum Man page Source code
cf_profile_getProfilesOptimumBelowFit Man page Source code
cf_profile_getStartPar Man page Source code
cf_profile_plotPathsAffected Man page Source code
cf_profile_prepareAffectedPaths Man page Source code
cfcolors Man page
cfcolorsFULL Man page
cfggplot Man page Source code
cfgrab Man page Source code
cfoutput_MdTable Man page Source code
check_clusterTimeStamp Man page Source code
clusterStatusMessage Man page Source code
dMod_files Man page Source code
dMod_readL1 Man page Source code
dMod_readMstrust Man page Source code
dMod_readProfiles Man page Source code
dMod_saveL1 Man page Source code
dMod_saveMstrust Man page Source code
dMod_saveProfiles Man page Source code
dco_expandPatterns Man page Source code
dmod_obs_2_petab_obs Man page
eqnlist_addDefaultCompartment Man page Source code
facet_grid_paginate Man page
facet_wrap_paginate Man page
fitModelPEtabSBML Man page Source code
getCompartmentInfo Man page Source code
getConditionsSBML Man page Source code
getDataPEtabSBML Man page Source code
getEventInfo Man page Source code
getFacets Man page Source code
getInitialsSBML Man page Source code
getObservablesSBML Man page Source code
getPaginateInfo Man page Source code
getParInfo Man page Source code
getParametersSBML Man page Source code
getReactionInfo Man page Source code
getReactionsSBML Man page Source code
getSpeciesInfo Man page Source code
getTrafoType Man page Source code
getUnitInfo Man page Source code
importPEtabSBML Man page Source code
importPEtabSBML_indiv Man page Source code
indiv2Classic Man page Source code
indiv2Classic_compileTrafo Man page Source code
indiv2Classic_gridlist2cond.grid Man page Source code
indiv2Classic_merge_grids Man page Source code
indiv2Classic_trafo Man page Source code
indiv2classic_getFasterVersion Man page Source code
initPd Man page Source code Source code
inputFileChanged Man page Source code
inverse_scale Man page Source code
knechtStatusMessage Man page Source code
lin Man page Source code
n_pages Man page
pars2parframe Man page Source code
pdFolder_files Source code
pdIndiv_getBaseScales Man page Source code
pdIndiv_getParameters_conditionGrid Man page Source code
pdIndiv_initializeGridlist Man page Source code
pdIndiv_rebuildPrdObj Man page Source code
pdIndiv_updateControls Man page Source code
pd_L1_createPetabFromUnbiasedFit Man page Source code
pd_L1_getModelCandidates Man page Source code
pd_L1_getObjBounds Man page Source code
pd_L1_getUnbiasedParframeAllCandidates Man page Source code
pd_L1_getUnbiasedValues Man page Source code
pd_L1_plotDevianceVsLambda Man page Source code
pd_L1_plotIsConvergedVsLambda Man page Source code
pd_L1_plotModelCandidates Man page Source code
pd_L1_plotMstrustScanWaterfalls Man page Source code
pd_L1_plotParValueVsLambda Man page Source code
pd_L1_plotValueVsLambda Man page Source code
pd_L1_preparePlottingData Man page Source code
pd_addObjPrior Man page Source code
pd_cluster_L1 Man page Source code
pd_cluster_L1_fitUnbiasedEachMstrust Man page Source code
pd_cluster_L1_fitUnbiasedEachOnce Man page Source code
pd_cluster_L1_mstrust Man page Source code
pd_cluster_mstrust Man page Source code
pd_cluster_profile Man page Source code
pd_debug_p0 Man page Source code
pd_files Man page Source code
pd_fit Man page Source code
pd_fitMstrust Man page Source code
pd_fitObsPars Man page Source code
pd_guessPetabYaml Man page Source code
pd_knecht_L1 Man page Source code
pd_knecht_L1_fitUnbiasedEachMstrust Man page Source code
pd_knecht_L1_fitUnbiasedEachOnce Man page Source code
pd_knecht_L1_mstrust Man page Source code
pd_knecht_mstrust Man page Source code
pd_knecht_profile Man page Source code
pd_mstrust Man page Source code
pd_objtimes Man page Source code
pd_parf_collect Man page Source code
pd_parf_collectL1 Man page Source code
pd_parf_collectMstrust Man page Source code
pd_parf_collectPars Man page Source code
pd_parf_collectProfile Man page Source code
pd_parf_opt.L1 Source code
pd_parf_opt.base Source code
pd_parf_opt.mstrust Source code
pd_parf_opt.profile Source code
pd_pars_getFixedOnBoundary Man page Source code
pd_petabSelect_collectEstimatedParameters Man page Source code
pd_petabSelect_collectParameters Man page Source code
pd_petabSelect_collectReportYamlCriteria Man page Source code
pd_petabSelect_reportYaml Man page Source code
pd_plotParsParallelLines Man page Source code
pd_plotParsParallelLines2 Source code
pd_plotProfile Man page Source code
pd_plotProfilePaths Man page Source code
pd_plot_compareParameters Man page Source code
pd_predictAndPlot2 Man page Source code
pd_predtimes Man page Source code
pd_profile Man page Source code
pd_profile_getParsNotYetProfiled Man page Source code
pd_rdsfile Man page Source code
pd_removeProfiles Man page Source code
pd_tests Man page Source code
pd_updateEstPars Man page Source code
pe_L1_addL1ParsToExperimentalCondition Man page Source code
pe_L1_createL1Problem Man page Source code
pe_L1_updateParameterFormulaInjection Man page Source code
pe_sample_parameter_startpoints Man page Source code
pepy_sample_parameter_startpoints Man page Source code
petab Man page Source code
petabSelect_LRT Man page Source code
petabSelect_collectReportYamlCriteria Man page Source code
petabSelect_compareModels Man page Source code
petabSelect_readReportYaml Man page Source code
petabSelect_reportYaml Man page Source code
petabSelect_searchYamls Man page Source code
petabSelect_writeReportYaml Man page Source code
petabYaml Man page Source code
petab_applyInverseObservableTransformation Man page Source code
petab_applyObservableTransformation Man page Source code
petab_columns Man page Source code
petab_combine Man page Source code
petab_combine_experimentalCondition Man page Source code
petab_combine_measurementData Man page Source code
petab_combine_observables Man page Source code
petab_combine_parameters Man page Source code
petab_createObjPrior Man page Source code
petab_create_parameter_df Man page Source code
petab_dput Man page Source code
petab_duplicateControls Man page Source code
petab_exampleList Man page Source code
petab_examplePath Man page Source code
petab_exampleRead Man page Source code
petab_experimentalCondition Man page Source code
petab_files Man page Source code
petab_files_default Man page Source code
petab_files_fromYaml Man page Source code
petab_fixErrorModel Man page Source code
petab_getMeasurementParsMapping Man page Source code
petab_getMeasurementParsScales Source code
petab_getParameterBoundaries Man page Source code
petab_getParameterType Man page Source code
petab_getParametersExperimentalCondition Man page Source code
petab_getParametersToEstimate Man page Source code
petab_getPars_estScale Man page Source code
petab_getPars_linScale Man page Source code
petab_hash Man page Source code
petab_joinDCO Man page Source code
petab_lint Man page Source code
petab_measurementData Man page Source code
petab_mergeParameters Man page Source code
petab_meta Man page Source code
petab_metaInformation_getPatterns Man page Source code
petab_model Man page Source code
petab_modelname_path Man page Source code
petab_mutateDCO Man page Source code
petab_observables Man page Source code
petab_overview Man page Source code
petab_overviewDCONames Man page Source code
petab_overviewObsPerCond Man page Source code
petab_parameterFormulaInjection Man page Source code
petab_parameters Man page Source code
petab_parameters_mergeParameters Man page Source code
petab_plotData Man page Source code
petab_plotHelpers_aeslist Man page Source code
petab_plotHelpers_meanMeasurementsValue Man page Source code
petab_plotHelpers_parameterOrder Man page Source code
petab_plotHelpers_variableOrder Man page Source code
petab_python_installPackages Man page Source code
petab_python_setup Man page Source code
petab_select_examplePath Man page Source code
petab_setPars_estScale Man page Source code
petab_setPars_linScale Man page Source code
petab_transformPars_est2Lin Man page Source code
petab_transformPars_lin2Est Man page Source code
petab_unjoinDCO Man page Source code
plotPEtabSBML Man page Source code
plotParameterComparison Man page Source code
readPd Man page Source code
readPetab Man page Source code
reexports Man page
sanitizePowers Man page Source code
sbmlImport_getCompartmentsFromSBML Man page Source code
sbmlImport_getEventStrings Source code
sbmlImport_getEventsFromTrueEvents Man page Source code
sbmlImport_getFunctionInfo Man page Source code
sbmlImport_getInitialsFromSBML Man page Source code
sbmlImport_getParametersFromSBML Man page Source code
sbmlImport_getReactionDetails Man page Source code
sbml_addOneCompartment Man page Source code
sbml_addOneEvent Man page Source code
sbml_addOneParameter Man page Source code
sbml_addOneReaction Man page Source code
sbml_addOneSpecies Man page Source code
sbml_addOneUnit Man page Source code
sbml_exportEquationList Man page Source code
sbml_initialize Man page Source code
sbml_kineticLawAddParameters Man page Source code
sbml_reactionAddKineticLaw Man page Source code
sbml_reactionAddModifiers Man page Source code
sbml_reactionAddProducts Man page Source code
sbml_reactionAddReactants Man page Source code
sbml_validateSBML Man page Source code
scale_color_cf Man page Source code
smblImport_replaceFunctions Man page Source code
stepMax Man page
subsetPredictionToData Man page Source code
testPEtabSBML Man page Source code
theme_cf Man page Source code
tidyverse_logo Man page
updateParscalesToBaseTrafo Man page Source code
writePd Man page Source code
writePetab Man page Source code
write_clusterTimeStamp Man page Source code
dlill/petab documentation built on Oct. 9, 2022, 3:07 p.m.