Files in dlill/petab
PEtab support for R

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

LICENSE

MIT-license

NAMESPACE

R/PEtab.R R/SBML-Export.R R/copied_from_conveniencefunctions.R R/dMod-import.R R/dMod-indiv2Classic.R R/dMod-pd.R R/examples.R R/pdProject.R R/pd_knecht.R R/petab_select.R R/re-exports.R R/tools.R R/tools_SB.R Readme.md

codecov.yml

docs/PEtab.png

docs/petabLogo.png

docs/petabLogo.pptx

docs/petabLogo.xcf

docs/petabLogoSmall.png

docs/petabLogoSmall.xcf

inst/petabExamples/01-EnzymeKinetics/Compiled/P_petab.c

inst/petabExamples/01-EnzymeKinetics/Compiled/P_petab.o

inst/petabExamples/01-EnzymeKinetics/Compiled/P_petab.so

inst/petabExamples/01-EnzymeKinetics/Compiled/P_petab_deriv.c

inst/petabExamples/01-EnzymeKinetics/Compiled/P_petab_deriv.o

inst/petabExamples/01-EnzymeKinetics/Compiled/P_petab_deriv.so

inst/petabExamples/01-EnzymeKinetics/Compiled/errfn_petab.c

inst/petabExamples/01-EnzymeKinetics/Compiled/errfn_petab.o

inst/petabExamples/01-EnzymeKinetics/Compiled/errfn_petab.so

inst/petabExamples/01-EnzymeKinetics/Compiled/errfn_petab_deriv.c

inst/petabExamples/01-EnzymeKinetics/Compiled/errfn_petab_deriv.o

inst/petabExamples/01-EnzymeKinetics/Compiled/errfn_petab_deriv.so

inst/petabExamples/01-EnzymeKinetics/Compiled/g_petab.c

inst/petabExamples/01-EnzymeKinetics/Compiled/g_petab.o

inst/petabExamples/01-EnzymeKinetics/Compiled/g_petab.so

inst/petabExamples/01-EnzymeKinetics/Compiled/g_petab_deriv.c

inst/petabExamples/01-EnzymeKinetics/Compiled/g_petab_deriv.o

inst/petabExamples/01-EnzymeKinetics/Compiled/g_petab_deriv.so

inst/petabExamples/01-EnzymeKinetics/Compiled/odemodel_petab.c

inst/petabExamples/01-EnzymeKinetics/Compiled/odemodel_petab.o

inst/petabExamples/01-EnzymeKinetics/Compiled/odemodel_petab.so

inst/petabExamples/01-EnzymeKinetics/Compiled/odemodel_petab_s.c

inst/petabExamples/01-EnzymeKinetics/Compiled/odemodel_petab_s.o

inst/petabExamples/01-EnzymeKinetics/Compiled/odemodel_petab_s.so

inst/petabExamples/01-EnzymeKinetics/Compiled/petab_indiv.rds

inst/petabExamples/01-EnzymeKinetics/Results/mstrust/.jobPurged

inst/petabExamples/01-EnzymeKinetics/Results/mstrust/.mstrust_mstrust_.jobPurged

inst/petabExamples/01-EnzymeKinetics/Results/mstrust/.mstrust_redoit_.jobPurged

inst/petabExamples/01-EnzymeKinetics/Results/mstrust/mstrustList-1.rds

inst/petabExamples/01-EnzymeKinetics/Results/mstrust/mstrustList-mstrust.rds

inst/petabExamples/01-EnzymeKinetics/Results/mstrust/mstrustList-redoit.rds

inst/petabExamples/01-EnzymeKinetics/S001-petab-export.R inst/petabExamples/01-EnzymeKinetics/S002-petab-fit.R inst/petabExamples/01-EnzymeKinetics/S003-petab-mstrust-Cluster.R

inst/petabExamples/01-EnzymeKinetics/exampleNotes.txt

inst/petabExamples/01-EnzymeKinetics/petab/experimentalCondition_petab.tsv

inst/petabExamples/01-EnzymeKinetics/petab/measurementData_petab.tsv

inst/petabExamples/01-EnzymeKinetics/petab/model_petab.rds

inst/petabExamples/01-EnzymeKinetics/petab/model_petab.xml

inst/petabExamples/01-EnzymeKinetics/petab/observables_petab.tsv

inst/petabExamples/01-EnzymeKinetics/petab/parameters_petab.tsv

inst/petabExamples/01-EnzymeKinetics/petab/petab.yaml

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/.obsparsfitted

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/PInjected_petab.c

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/PInjected_petab.o

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/PInjected_petab.so

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/PInjected_petab_deriv.c

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/PInjected_petab_deriv.o

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/PInjected_petab_deriv.so

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/P_petab.c

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/P_petab.o

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/P_petab.so

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/P_petab_deriv.c

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/P_petab_deriv.o

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/P_petab_deriv.so

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/errfn_petab.c

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/errfn_petab.o

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/errfn_petab.so

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/errfn_petab_deriv.c

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/errfn_petab_deriv.o

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/errfn_petab_deriv.so

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/g_petab.c

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/g_petab.o

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/g_petab.so

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/g_petab_deriv.c

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/g_petab_deriv.o

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/g_petab_deriv.so

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/odemodel_petab.c

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/odemodel_petab.o

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/odemodel_petab.so

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/odemodel_petab_s.c

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/odemodel_petab_s.o

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/odemodel_petab_s.so

inst/petabExamples/02-EnzymeKinetics-Turnover/Compiled/petab_indiv.rds

inst/petabExamples/02-EnzymeKinetics-Turnover/Outputs/01-BasicSimulation.png

inst/petabExamples/02-EnzymeKinetics-Turnover/Outputs/02-Data.png

inst/petabExamples/02-EnzymeKinetics-Turnover/Results/mstrust/mstrustList-1.rds

inst/petabExamples/02-EnzymeKinetics-Turnover/S001-petab-export.R inst/petabExamples/02-EnzymeKinetics-Turnover/S002-petab-fit.R

inst/petabExamples/02-EnzymeKinetics-Turnover/exampleNotes.txt

inst/petabExamples/02-EnzymeKinetics-Turnover/fit1/trial-1-15-05-2021-231256/interRes/fit-1.R

inst/petabExamples/02-EnzymeKinetics-Turnover/fit1/trial-1-15-05-2021-231256/interRes/fit-1.Rda

inst/petabExamples/02-EnzymeKinetics-Turnover/fit1/trial-1-15-05-2021-231256/interRes/fit-2.R

inst/petabExamples/02-EnzymeKinetics-Turnover/fit1/trial-1-15-05-2021-231256/interRes/fit-2.Rda

inst/petabExamples/02-EnzymeKinetics-Turnover/fit1/trial-1-15-05-2021-231256/interRes/fit-3.R

inst/petabExamples/02-EnzymeKinetics-Turnover/fit1/trial-1-15-05-2021-231256/interRes/fit-3.Rda

inst/petabExamples/02-EnzymeKinetics-Turnover/fit1/trial-1-15-05-2021-231256/interRes/fit-4.R

inst/petabExamples/02-EnzymeKinetics-Turnover/fit1/trial-1-15-05-2021-231256/interRes/fit-4.Rda

inst/petabExamples/02-EnzymeKinetics-Turnover/fit1/trial-1-15-05-2021-231256/interRes/fit-5.R

inst/petabExamples/02-EnzymeKinetics-Turnover/fit1/trial-1-15-05-2021-231256/interRes/fit-5.Rda

inst/petabExamples/02-EnzymeKinetics-Turnover/fit1/trial-1-15-05-2021-231256/interRes/fit-6.R

inst/petabExamples/02-EnzymeKinetics-Turnover/fit1/trial-1-15-05-2021-231256/interRes/fit-6.Rda

inst/petabExamples/02-EnzymeKinetics-Turnover/fit1/trial-1-15-05-2021-231256/interRes/fit-7.R

inst/petabExamples/02-EnzymeKinetics-Turnover/fit1/trial-1-15-05-2021-231256/interRes/fit-7.Rda

inst/petabExamples/02-EnzymeKinetics-Turnover/fit1/trial-1-15-05-2021-231256/interRes/fit-8.R

inst/petabExamples/02-EnzymeKinetics-Turnover/fit1/trial-1-15-05-2021-231256/interRes/fit-8.Rda

inst/petabExamples/02-EnzymeKinetics-Turnover/fit1/trial-1-15-05-2021-231256/interRes/fit-9.R

inst/petabExamples/02-EnzymeKinetics-Turnover/fit1/trial-1-15-05-2021-231256/interRes/fit-9.Rda

inst/petabExamples/02-EnzymeKinetics-Turnover/fit1/trial-1-15-05-2021-231256/mstrust.log

inst/petabExamples/02-EnzymeKinetics-Turnover/fit1/trial-1-15-05-2021-231256/parameterList.Rda

inst/petabExamples/02-EnzymeKinetics-Turnover/petab/experimentalCondition_petab.tsv

inst/petabExamples/02-EnzymeKinetics-Turnover/petab/measurementData_petab.tsv

inst/petabExamples/02-EnzymeKinetics-Turnover/petab/meta_petab.rds

inst/petabExamples/02-EnzymeKinetics-Turnover/petab/model_petab.rds

inst/petabExamples/02-EnzymeKinetics-Turnover/petab/model_petab.xml

inst/petabExamples/02-EnzymeKinetics-Turnover/petab/observables_petab.tsv

inst/petabExamples/02-EnzymeKinetics-Turnover/petab/parameters_petab.tsv

inst/petabExamples/02-EnzymeKinetics-Turnover/petab/petab.yaml

inst/petabExamples/02-EnzymeKinetics-Turnover/profiles-interRes/E-left.R inst/petabExamples/02-EnzymeKinetics-Turnover/profiles-interRes/E-right.R inst/petabExamples/02-EnzymeKinetics-Turnover/profiles-interRes/S-left.R inst/petabExamples/02-EnzymeKinetics-Turnover/profiles-interRes/S-right.R inst/petabExamples/03-Bachmann/01-LoadBachmann.R

inst/petabExamples/03-Bachmann/Bachmann_MSB2011/Bachmann_MSB2011.yaml

inst/petabExamples/03-Bachmann/Bachmann_MSB2011/experimentalCondition_Bachmann_MSB2011.tsv

inst/petabExamples/03-Bachmann/Bachmann_MSB2011/measurementData_Bachmann_MSB2011.tsv

inst/petabExamples/03-Bachmann/Bachmann_MSB2011/model_Bachmann_MSB2011.xml

inst/petabExamples/03-Bachmann/Bachmann_MSB2011/observables_Bachmann_MSB2011.tsv

inst/petabExamples/03-Bachmann/Bachmann_MSB2011/parameters_Bachmann_MSB2011.tsv

inst/petabExamples/03-Bachmann/Bachmann_MSB2011/simulatedData_Bachmann_MSB2011.tsv

inst/petabExamples/03-Bachmann/Output/Compiled/Bachmann_MSB2011_indiv.rds

inst/petabExamples/03-Bachmann/Output/Compiled/P_Bachmann_MSB2011.c

inst/petabExamples/03-Bachmann/Output/Compiled/P_Bachmann_MSB2011.o

inst/petabExamples/03-Bachmann/Output/Compiled/P_Bachmann_MSB2011.so

inst/petabExamples/03-Bachmann/Output/Compiled/P_Bachmann_MSB2011_deriv.c

inst/petabExamples/03-Bachmann/Output/Compiled/P_Bachmann_MSB2011_deriv.o

inst/petabExamples/03-Bachmann/Output/Compiled/P_Bachmann_MSB2011_deriv.so

inst/petabExamples/03-Bachmann/Output/Compiled/errfn_Bachmann_MSB2011.c

inst/petabExamples/03-Bachmann/Output/Compiled/errfn_Bachmann_MSB2011.o

inst/petabExamples/03-Bachmann/Output/Compiled/errfn_Bachmann_MSB2011.so

inst/petabExamples/03-Bachmann/Output/Compiled/errfn_Bachmann_MSB2011_deriv.c

inst/petabExamples/03-Bachmann/Output/Compiled/errfn_Bachmann_MSB2011_deriv.o

inst/petabExamples/03-Bachmann/Output/Compiled/errfn_Bachmann_MSB2011_deriv.so

inst/petabExamples/03-Bachmann/Output/Compiled/g_Bachmann_MSB2011.c

inst/petabExamples/03-Bachmann/Output/Compiled/g_Bachmann_MSB2011.o

inst/petabExamples/03-Bachmann/Output/Compiled/g_Bachmann_MSB2011.so

inst/petabExamples/03-Bachmann/Output/Compiled/g_Bachmann_MSB2011_deriv.c

inst/petabExamples/03-Bachmann/Output/Compiled/g_Bachmann_MSB2011_deriv.o

inst/petabExamples/03-Bachmann/Output/Compiled/g_Bachmann_MSB2011_deriv.so

inst/petabExamples/03-Bachmann/Output/Compiled/odemodel_Bachmann_MSB2011.c

inst/petabExamples/03-Bachmann/Output/Compiled/odemodel_Bachmann_MSB2011.o

inst/petabExamples/03-Bachmann/Output/Compiled/odemodel_Bachmann_MSB2011.so

inst/petabExamples/03-Bachmann/Output/Compiled/odemodel_Bachmann_MSB2011_s.c

inst/petabExamples/03-Bachmann/Output/Compiled/odemodel_Bachmann_MSB2011_s.o

inst/petabExamples/03-Bachmann/Output/Compiled/odemodel_Bachmann_MSB2011_s.so

inst/petabExamples/03-Bachmann/petab/experimentalCondition_petab.tsv

inst/petabExamples/03-Bachmann/petab/measurementData_petab.tsv

inst/petabExamples/03-Bachmann/petab/observables_petab.tsv

inst/petabExamples/03-Bachmann/petab/parameters_petab.tsv

inst/petabExamples/03-Bachmann/petab/petab.yaml

inst/petabExamples/03-Bachmann/petab/simulatedData_petab.tsv

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/P_petab.c

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/P_petab.o

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/P_petab.so

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/P_petab_deriv.c

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/P_petab_deriv.o

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/P_petab_deriv.so

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/errfn_petab.c

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/errfn_petab.o

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/errfn_petab.so

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/errfn_petab_deriv.c

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/errfn_petab_deriv.o

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/errfn_petab_deriv.so

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/g_petab.c

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/g_petab.o

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/g_petab.so

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/g_petab_deriv.c

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/g_petab_deriv.o

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/g_petab_deriv.so

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/odemodel_petab.c

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/odemodel_petab.o

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/odemodel_petab.so

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/odemodel_petab_s.c

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/odemodel_petab_s.o

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/odemodel_petab_s.so

inst/petabExamples/04-EnzymeKinetics-TwoCond/Compiled/petab_indiv.rds

inst/petabExamples/04-EnzymeKinetics-TwoCond/Results/mstrust/mstrustList-base.rds

inst/petabExamples/04-EnzymeKinetics-TwoCond/Results/mstrust/mstrustList-base_obsParsFitted.rds

inst/petabExamples/04-EnzymeKinetics-TwoCond/Results/mstrust/mstrustList-mstrust.rds

inst/petabExamples/04-EnzymeKinetics-TwoCond/S001-petab-export.R inst/petabExamples/04-EnzymeKinetics-TwoCond/S002-petab-fit.R

inst/petabExamples/04-EnzymeKinetics-TwoCond/exampleNotes.txt

inst/petabExamples/04-EnzymeKinetics-TwoCond/fit/trial-1-13-09-2021-135648/mstrust.log

inst/petabExamples/04-EnzymeKinetics-TwoCond/fit/trial-2-13-09-2021-141803/mstrust.log

inst/petabExamples/04-EnzymeKinetics-TwoCond/fit/trial-3-13-09-2021-141828/mstrust.log

inst/petabExamples/04-EnzymeKinetics-TwoCond/fit/trial-4-13-09-2021-141855/mstrust.log

inst/petabExamples/04-EnzymeKinetics-TwoCond/fit/trial-5-13-09-2021-141936/mstrust.log

inst/petabExamples/04-EnzymeKinetics-TwoCond/fit/trial-6-15-12-2021-102624/mstrust.log

inst/petabExamples/04-EnzymeKinetics-TwoCond/petab/experimentalCondition_petab.tsv

inst/petabExamples/04-EnzymeKinetics-TwoCond/petab/measurementData_petab.tsv

inst/petabExamples/04-EnzymeKinetics-TwoCond/petab/model_petab.rds

inst/petabExamples/04-EnzymeKinetics-TwoCond/petab/model_petab.xml

inst/petabExamples/04-EnzymeKinetics-TwoCond/petab/observables_petab.tsv

inst/petabExamples/04-EnzymeKinetics-TwoCond/petab/parameters_petab.tsv

inst/petabExamples/04-EnzymeKinetics-TwoCond/petab/petab.yaml

inst/petabExamples/04-EnzymeKinetics-TwoCond/petab/petab_report.yaml

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/PInjected_petab.c

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/PInjected_petab.o

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/PInjected_petab.so

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/PInjected_petab_deriv.c

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/PInjected_petab_deriv.o

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/PInjected_petab_deriv.so

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/P_petab.c

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/P_petab.o

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/P_petab.so

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/P_petab_deriv.c

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/P_petab_deriv.o

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/P_petab_deriv.so

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/errfn_petab.c

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/errfn_petab.o

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/errfn_petab.so

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/errfn_petab_deriv.c

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/errfn_petab_deriv.o

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/errfn_petab_deriv.so

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/g_petab.c

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/g_petab.o

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/g_petab.so

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/g_petab_deriv.c

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/g_petab_deriv.o

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/g_petab_deriv.so

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/odemodel_petab.c

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/odemodel_petab.o

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/odemodel_petab.so

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/odemodel_petab_s.c

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/odemodel_petab_s.o

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/odemodel_petab_s.so

inst/petabExamples/05-EnzymeKinetics-L1/Compiled/petab_indiv.rds

inst/petabExamples/05-EnzymeKinetics-L1/basemodel/basemodel.yaml

inst/petabExamples/05-EnzymeKinetics-L1/basemodel/experimentalCondition_basemodel.tsv

inst/petabExamples/05-EnzymeKinetics-L1/basemodel/measurementData_basemodel.tsv

inst/petabExamples/05-EnzymeKinetics-L1/basemodel/model_basemodel.rds

inst/petabExamples/05-EnzymeKinetics-L1/basemodel/model_basemodel.xml

inst/petabExamples/05-EnzymeKinetics-L1/basemodel/observables_basemodel.tsv

inst/petabExamples/05-EnzymeKinetics-L1/basemodel/parameters_basemodel.tsv

inst/petabExamples/05-EnzymeKinetics-L1/exampleNotes.txt

inst/petabExamples/05-EnzymeKinetics-L1/petab/experimentalCondition_petab.tsv

inst/petabExamples/05-EnzymeKinetics-L1/petab/measurementData_petab.tsv

inst/petabExamples/05-EnzymeKinetics-L1/petab/meta_petab.rds

inst/petabExamples/05-EnzymeKinetics-L1/petab/model_petab.rds

inst/petabExamples/05-EnzymeKinetics-L1/petab/model_petab.xml

inst/petabExamples/05-EnzymeKinetics-L1/petab/observables_petab.tsv

inst/petabExamples/05-EnzymeKinetics-L1/petab/parameters_petab.tsv

inst/petabExamples/05-EnzymeKinetics-L1/petab/petab.yaml

inst/petabExamples/05-EnzymeKinetics-L1/profiles-interRes/L1_E_C2-left.R inst/petabExamples/05-EnzymeKinetics-L1/profiles-interRes/L1_E_C2-right.R inst/petabExamples/05-EnzymeKinetics-L1/profiles-interRes/L1_kcat_C2-left.R inst/petabExamples/05-EnzymeKinetics-L1/profiles-interRes/L1_kcat_C2-right.R

inst/petabExamples/05-EnzymeKinetics-L1/profiles-interRes/mstrust/mstrustList-1.rds

inst/petabExamples/06-EK-2cond-CondSpecObservables/Compiled/P_petab.c

inst/petabExamples/06-EK-2cond-CondSpecObservables/Compiled/P_petab.o

inst/petabExamples/06-EK-2cond-CondSpecObservables/Compiled/P_petab.so

inst/petabExamples/06-EK-2cond-CondSpecObservables/Compiled/P_petab_deriv.c

inst/petabExamples/06-EK-2cond-CondSpecObservables/Compiled/P_petab_deriv.o

inst/petabExamples/06-EK-2cond-CondSpecObservables/Compiled/P_petab_deriv.so

inst/petabExamples/06-EK-2cond-CondSpecObservables/Compiled/errfn_petab.c

inst/petabExamples/06-EK-2cond-CondSpecObservables/Compiled/errfn_petab.o

inst/petabExamples/06-EK-2cond-CondSpecObservables/Compiled/errfn_petab.so

inst/petabExamples/06-EK-2cond-CondSpecObservables/Compiled/errfn_petab_deriv.c

inst/petabExamples/06-EK-2cond-CondSpecObservables/Compiled/errfn_petab_deriv.o

inst/petabExamples/06-EK-2cond-CondSpecObservables/Compiled/errfn_petab_deriv.so

inst/petabExamples/06-EK-2cond-CondSpecObservables/Compiled/g_petab.c

inst/petabExamples/06-EK-2cond-CondSpecObservables/Compiled/g_petab.o

inst/petabExamples/06-EK-2cond-CondSpecObservables/Compiled/g_petab.so

inst/petabExamples/06-EK-2cond-CondSpecObservables/Compiled/g_petab_deriv.c

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inst/petabExamples/07-ABC/Results/mstrust/mstrustList-base.rds

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inst/petabExamples/07-ABC/exampleNotes.txt

inst/petabExamples/07-ABC/petab/experimentalCondition_petab.tsv

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inst/petab_select_examples/0001/expected.yaml

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inst/petab_select_examples/0001/petab_1/_parameters.tsv

inst/petab_select_examples/0001/petab_1/petab_1.yaml

inst/petab_select_examples/0001/selection_problem.yaml

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inst/petab_select_examples/0002/expected.yaml

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inst/petab_select_examples/0002/petab_1/_parameters.tsv

inst/petab_select_examples/0002/petab_1/petab_1.yaml

inst/petab_select_examples/0002/selection_problem.yaml

inst/petab_select_examples/0003/_model_space.tsv

inst/petab_select_examples/0003/expected.yaml

inst/petab_select_examples/0003/petab_1/_conditions.tsv

inst/petab_select_examples/0003/petab_1/_measurements.tsv

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inst/petab_select_examples/0003/petab_1/petab_1.yaml

inst/petab_select_examples/0003/selection_problem.yaml

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inst/petab_select_examples/0004/expected.yaml

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inst/petab_select_examples/0004/petab_1/_parameters.tsv

inst/petab_select_examples/0004/petab_1/petab_1.yaml

inst/petab_select_examples/0004/selection_problem.yaml

inst/petab_select_examples/0005/_initial_models.tsv

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petab.Rproj

playground/.gitignore

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playground/Daniel/TemplateFolder-PetabSelect/petabSelect/petabSelect-problem.yaml

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playground/Daniel/TemplateFolder-PetabSelect/petabSelect_state.yaml

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playground/Daniel/TemplateFolder/compiledObjects/mypetab/Optional.gitignore

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playground/Daniel/TemplateFolder/parameters/readme.md

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playground/SelectionProblem/M1_2_0/petab/conditions.tsv

playground/SelectionProblem/M1_2_0/petab/measurements.tsv

playground/SelectionProblem/M1_2_0/petab/model.xml

playground/SelectionProblem/M1_2_0/petab/observables.tsv

playground/SelectionProblem/M1_2_0/petab/parameters.tsv

playground/SelectionProblem/M1_2_0/petab/problem.yaml

playground/SelectionProblem/M1_2_0/petab/problem_report.yaml

playground/SelectionProblem/M1_3_0/CompiledObjects/problem_indiv.rds

playground/SelectionProblem/M1_3_0/Results/mstrust/mstrustList-5fits.rds

playground/SelectionProblem/M1_3_0/Results/mstrust/mstrustList-base.rds

playground/SelectionProblem/M1_3_0/Results/trial/trial-1-21-09-2021-180405/mstrust.log

playground/SelectionProblem/M1_3_0/petab/conditions.tsv

playground/SelectionProblem/M1_3_0/petab/measurements.tsv

playground/SelectionProblem/M1_3_0/petab/model.xml

playground/SelectionProblem/M1_3_0/petab/observables.tsv

playground/SelectionProblem/M1_3_0/petab/parameters.tsv

playground/SelectionProblem/M1_3_0/petab/problem.yaml

playground/SelectionProblem/M1_3_0/petab/problem_report.yaml

playground/SelectionProblem/M1_4_0/CompiledObjects/problem_indiv.rds

playground/SelectionProblem/M1_4_0/Results/mstrust/mstrustList-5fits.rds

playground/SelectionProblem/M1_4_0/Results/mstrust/mstrustList-base.rds

playground/SelectionProblem/M1_4_0/Results/trial/trial-1-21-09-2021-180409/mstrust.log

playground/SelectionProblem/M1_4_0/petab/conditions.tsv

playground/SelectionProblem/M1_4_0/petab/measurements.tsv

playground/SelectionProblem/M1_4_0/petab/model.xml

playground/SelectionProblem/M1_4_0/petab/observables.tsv

playground/SelectionProblem/M1_4_0/petab/parameters.tsv

playground/SelectionProblem/M1_4_0/petab/problem.yaml

playground/SelectionProblem/M1_4_0/petab/problem_report.yaml

playground/SelectionProblem/M1_5_0/CompiledObjects/problem_indiv.rds

playground/SelectionProblem/M1_5_0/Results/mstrust/mstrustList-5fits.rds

playground/SelectionProblem/M1_5_0/Results/mstrust/mstrustList-base.rds

playground/SelectionProblem/M1_5_0/Results/trial/trial-1-21-09-2021-180413/mstrust.log

playground/SelectionProblem/M1_5_0/petab/conditions.tsv

playground/SelectionProblem/M1_5_0/petab/measurements.tsv

playground/SelectionProblem/M1_5_0/petab/model.xml

playground/SelectionProblem/M1_5_0/petab/observables.tsv

playground/SelectionProblem/M1_5_0/petab/parameters.tsv

playground/SelectionProblem/M1_5_0/petab/problem.yaml

playground/SelectionProblem/M1_5_0/petab/problem_report.yaml

playground/SelectionProblem/M1_7_0/CompiledObjects/problem_indiv.rds

playground/SelectionProblem/M1_7_0/Results/mstrust/mstrustList-5fits.rds

playground/SelectionProblem/M1_7_0/Results/mstrust/mstrustList-base.rds

playground/SelectionProblem/M1_7_0/Results/trial/trial-1-21-09-2021-180416/mstrust.log

playground/SelectionProblem/M1_7_0/petab/conditions.tsv

playground/SelectionProblem/M1_7_0/petab/measurements.tsv

playground/SelectionProblem/M1_7_0/petab/model.xml

playground/SelectionProblem/M1_7_0/petab/observables.tsv

playground/SelectionProblem/M1_7_0/petab/parameters.tsv

playground/SelectionProblem/M1_7_0/petab/problem.yaml

playground/SelectionProblem/M1_7_0/petab/problem_report.yaml

playground/setup_svenja.R tests/testthat.R

tests/testthat/Results/mstrust/mstrustList-base.rds

tests/testthat/test-compilationAndSimulation.R

dlill/petab documentation built on Oct. 9, 2022, 3:07 p.m.

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