Files in dsherma7/PolyploidDosageCalling
Calls the Dosage From Tetraploid qPCR Data (CT/RQ Values)
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/AllComboFit.R
R/CallDosage.R
R/LinearModel.R
R/ManualDosageCalling.R
R/PresenceAbsenceCaller.R
R/SemiSupervisedClustering.R
README.md
data-raw/ControlsAssay1.csv
data-raw/ControlsAssay1CN.csv
data-raw/ControlsAssay2.csv
data-raw/ControlsAssay3.csv
data-raw/ControlsAssay3CN.csv
data-raw/ControlsPA.csv
data-raw/RawData.Assay1CN.xls
data-raw/RawData.Assay2.xls
data/ControlsJ101CN.rda
data/ControlsJ163.rda
data/ControlsKK179CN.rda
data/ControlsPA.rda
data/RawData.J163.rda
data/RawData.KK179CN.rda
man/AllPossibleCalSamples.Rd
man/BuildSummary.Rd
man/CallAllPA.Rd
man/CallDosage.Rd
man/CallDosageAPI.Rd
man/CallPA.Rd
man/CallSinglePA.Rd
man/ChooseClosestCluster.Rd
man/CombineDosages.Rd
man/ComputeScores.Rd
man/ConvertList.Rd
man/CountSections.Rd
man/DosageOfAllCombos.Rd
man/DosageOfGivenCombo.Rd
man/GetConf.Rd
man/GetDosage.Rd
man/GetDosageForSinglePlate.Rd
man/GetManualCall.Rd
man/GetPCH.Rd
man/GetPredicted.Rd
man/GetSemiSuperClusters.Rd
man/LoadAllData.Rd
man/MakeSwaps.Rd
man/ManualCall.Rd
man/ManualCall.Trials.Rd
man/MeasureConfidence.Rd
man/MyClustering.Rd
man/ParsePAComments.Rd
man/PlotPA.Rd
man/PrintBarGraph.Rd
man/PrintGraph.Rd
man/RemoveDuplicateNames.Rd
man/distance.Rd
man/isOutlier.Rd
