ManualCall.Trials: Runs Multiple Iterations of Manual Call

In dsherma7/PolyploidDosageCalling: Calls the Dosage From Tetraploid qPCR Data (CT/RQ Values)

Description

This function runs multiple iterations of manual call with smaller and smaller refinement of clustering.

Usage

ManualCall.Trials(RQ.Vals, ploidy = 4, from = 0.01, to = 1, by = 0.01,
  min = 0, max = NULL, bin.threshold = 0.01)

Arguments

RQ.Vals	A list of RQ values. Runs faster if this is already sorted.
ploidy	The number of sets of chromosomes in a cell.
from	The smallest interval length for calling Manual Call with.
to	The largest interval length for calling Manual Call with.
by	The steps between from and to.
min	The smallest RQ value to be considered.
max	The largest RQ value to be considered. NULL implies no limit.
bin.threshold	The minimum percentage that a bin (cluster) is allowed to be relative to all the values.

dsherma7/PolyploidDosageCalling documentation built on May 23, 2019, 6:06 p.m.