ManualCall: Simulated Manual Dosage Call

In dsherma7/PolyploidDosageCalling: Calls the Dosage From Tetraploid qPCR Data (CT/RQ Values)

Description

Simulates pre-existing manual calling method by clustering sorted RQ values.

Usage

ManualCall(RQ.Vals, by.val = 0.1, min = 0, max = NULL,
  bin.threshold = 0.01, min.threshold = 1)

Arguments

RQ.Vals	A list of RQ values. Runs faster if this is already sorted.
by.val	The steps between from and to.
min	The smallest RQ value to be considered.
max	The largest RQ value to be considered. NULL implies no limit.
bin.threshold	The minimum percentage that a bin (cluster) is allowed to be relative to all the values.
min.threshold	Minimum number of samples allowed in each cluster.

dsherma7/PolyploidDosageCalling documentation built on May 23, 2019, 6:06 p.m.