CallAllPA: Runs CallPA() on all files in a directory

In dsherma7/PolyploidDosageCalling: Calls the Dosage From Tetraploid qPCR Data (CT/RQ Values)

Description

This function determined the Presence/Absence of the appropriate assay based on the Quant Studio output file.

Usage

CallAllPA(PAData, sheetname, Controls, output.dir, outlier.threshold = 3, header = c("..."), console = FALSE)

Arguments

PAData	A list of lists of each plate's Quant Studio Results file for Presence/Absence. Must contain Allele1.Delta.Rn and Allele2.Delta.Rn
sheetname	Name of the sheet containing Allele Delta RN values
Controls	File containing the known presence/absence information. In general this contains one column for each type of assay.
output.dir	The directory to write the output files to, Plots will be placed in Plots sub directory
outlier.threshold	The number of standard deviations away from the mean a sample must be to be considered an outlier

dsherma7/PolyploidDosageCalling documentation built on May 23, 2019, 6:06 p.m.