ti_topslam: topslam
In dynverse/dynmethods: A collection of trajectory inference methods

ti_topslam

R Documentation

topslam

Description

Will generate a trajectory using topslam.

This method was wrapped inside a container. The original code of this method is available here.

Usage

ti_topslam(
  n_components = 2L,
  n_neighbors = 10L,
  linear_dims = 0L,
  max_iters = 1000L,
  dimreds = c("t-SNE", "PCA", "Spectral", "Isomap", "ICA")
)

Arguments

`n_components`	The number of components. Domain: U(2, 10). Default: 2. Format: integer.
`n_neighbors`	The number of neighbors. Domain: U(2, 100). Default: 10. Format: integer.
`linear_dims`	. Domain: U(0, 5). Default: 0. Format: integer.
`max_iters`	The number of iterations to optimize over. Domain: e^U(2.30, 9.21). Default: 1000. Format: integer.
`dimreds`	Which dimensionality reductions to use and/or ICA. Domain: all subsets of t-SNE, PCA, Spectral, Isomap, ICA. Default: t-SNE, PCA, Spectral, Isomap, ICA. Format: subset.