ti_tscan: TSCAN

In dynverse/dynmethods: A collection of trajectory inference methods

TSCAN

Description

Will generate a trajectory using TSCAN.

This method was wrapped inside a container. The original code of this method is available here.

Usage

ti_tscan(
  minexpr_percent = 0L,
  minexpr_value = 0L,
  cvcutoff = 0L,
  clusternum = c(2L, 9L),
  modelNames = "VVV"
)

Arguments

minexpr_percent	. Domain: U(0, 1). Default: 0. Format: numeric.
minexpr_value	. Domain: U(0, 10). Default: 0. Format: numeric.
cvcutoff	. Domain: U(0, 5). Default: 0. Format: numeric.
clusternum	. Domain: ( U(2, 20), U(2, 20) ). Default: (2, 9). Format: integer_range.
modelNames	. Domain: EII, VII, EEI, VEI, EVI, VVI, EEE, EVE, VEE, VVE, EEV, VEV, EVV, VVV. Default: VVV. Format: character.

Value

A TI method wrapper to be used together with infer_trajectory

References

Ji, Z., Ji, H., 2016. TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis. Nucleic Acids Research 44, e117–e117.

dynverse/dynmethods documentation built on Jan. 18, 2024, 4:44 a.m.