Files in edward130603/BayesSpace
Clustering and Resolution Enhancement of Spatial Transcriptomes
.Rbuildignore
.clang-format
.github/.gitignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/BayesSpace.R
R/RcppExports.R
R/enhanceFeatures.R
R/mcmcChain.R
R/parallelize.R
R/qTune.R
R/readVisium.R
R/spatialCluster.R
R/spatialEnhance.R
R/spatialPlot.R
R/spatialPreprocess.R
R/utils.R
README.md
configure
configure.win
inst/CITATION
inst/extdata/2018_thrane_melanoma/ST_mel1_rep2.Giotto_HMRF.csv
inst/extdata/2020_maynard_prefrontal-cortex/151673.Giotto_HMRF.csv
inst/extdata/2020_maynard_prefrontal-cortex/151673.stLearn_HVGs.csv
inst/extdata/2020_maynard_prefrontal-cortex/151673.stLearn_markers.csv
inst/extdata/README.md
inst/logo/BayesSpace_logo_alt.png
inst/logo/hex_sticker.Rmd
inst/logo/logo.png
inst/testdata/maynard_151673_subset.PCs.csv.gz
inst/testdata/maynard_151673_subset.colData.csv.gz
inst/testdata/maynard_151673_subset.enhance_truth.csv.gz
inst/testdata/maynard_151673_subset.metadata.rds
man/BayesSpace.Rd
man/Mode.Rd
man/cluster.Rd
man/clusterPlot.Rd
man/deconvolve.Rd
man/dot-adjust_hex_centers.Rd
man/dot-bsData.Rd
man/dot-clean_chain.Rd
man/dot-compute_interspot_distances.Rd
man/dot-extract_indices.Rd
man/dot-find_neighbors.Rd
man/dot-flatten_matrix_list.Rd
man/dot-flip_axis.Rd
man/dot-infer_param_dims.Rd
man/dot-init_cluster.Rd
man/dot-list2vec.Rd
man/dot-make_hex_spots.Rd
man/dot-make_index_names.Rd
man/dot-make_spot_vertices.Rd
man/dot-make_square_spots.Rd
man/dot-make_subspot_coldata.Rd
man/dot-make_subspots.Rd
man/dot-make_triangle_subspots.Rd
man/dot-make_vertices.Rd
man/dot-prepare_inputs.Rd
man/dot-read_chain.Rd
man/dot-read_spot_pos.Rd
man/dot-select_spot_positions.Rd
man/dot-select_subspot_positions.Rd
man/enhanceFeatures.Rd
man/exampleSCE.Rd
man/featurePlot.Rd
man/find_neighbors.Rd
man/getRDS.Rd
man/mcmcChain.Rd
man/parallelize.Rd
man/qTune.Rd
man/readVisium.Rd
man/spatialCluster.Rd
man/spatialEnhance.Rd
man/spatialPlot.Rd
man/spatialPreprocess.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/cluster.cpp
src/compare_enhanced.cpp
src/double_states_vector.h
src/neighbor.h
src/utils.h
tests/testthat.R
tests/testthat/test-enhanceFeatures.R
tests/testthat/test-find_neighbors.R
tests/testthat/test-mcmcChain.R
vignettes/.gitignore
vignettes/BayesSpace.Rmd
