dot-checkProbeMapping: Checks that a probe mapping has the correct format.

Description Usage Arguments

Description

Briefly, the probe mapping should be formatted as a list with names as probes and values as genes. The names of the probe map should match the rownames of the matrix and the values should match the gene list. This function looks at the intersections, and throws an error if there is no intersection and prints a warning if the intersection is small (10

Usage

1
.checkProbeMapping(probe_mat, probe_map, gene_list)

Arguments

probe_mat

an expression matrix with probes as rows and columns as samples

probe_map

list mapping from probes to genes, names are probes, values are genes

gene_list

list of all genes to extract


erflynn/exprsex documentation built on Jan. 26, 2020, 10:07 a.m.